RchiOBHm_Chr4g0398391

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001640
Physical Location & Seq
Reverse (-)
14901062 .. 14903588
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 825 bp
ATGAATTGCCAGAATTGGTATGGGTCTTTAGTTTCTTACTTTTTCGTTTTCCATCAGGGGAGCCGGTTCACTTTTAGTTTGTCATGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGGTATGAACATATTCATGCCATTCTGGAACGATGTCGTTTGCTGCTCTACCCAACTAAACGATGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCTAGCAAGCTCTACTTTGACGTCCCGAGCTCTAAGGTTAAACCAGTATCTAAATTTGTCTGTGCTTTCAAGTTTACATTTTGGAATCTGAGAATTTCGCCAAGTTTACATCTTGGCATTGAGAAGCTGCATCCGTTCGATTCGGCTAAATGGGGTCGGAAATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGGTTTATCATTGTTGTGGGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGTTAAACATACTCAAGGATTATGAAGCAAAGAGATTCATTGATCAGAGGGTTAAAGTAGCGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGGGTTGATGGTCTATAATGCTGGAACTGATATTCTACTTGGCGATCCTCTGGGCAAGTTGAAGTCATCCATGGAGAAGAAGAGGAAATTGCAGATATCATGCCTAGAATTAAGGCTGCCAATTTTCATTTCACAGAAAGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

274

Amino Acids

31.46

Weight (kDa)

8.93

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 559
AciI CCGC 1 cut(s) 574
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 2 cut(s) 263, 303
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 657
AgsI TTSAA 2 cut(s) 280, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 790, 822
AluBI AGCT 5 cut(s) 220, 240, 337, 434, 674
AluI AGCT 5 cut(s) 220, 240, 337, 434, 674
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 159, 198, 337, 434, 793
ApoI RAATTY 2 cut(s) 263, 303
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 235
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 5 cut(s) 146, 210, 324, 421, 780
BccI CCATC 4 cut(s) 60, 461, 481, 679
BceAI ACGGC 1 cut(s) 186
BclI TGATCA 1 cut(s) 616
BfaI CTAG 2 cut(s) 213, 782
BfuAI ACCTGC 1 cut(s) 559
BglII AGATCT 1 cut(s) 445
BisI GCNGC 5 cut(s) 160, 199, 338, 435, 794
BlsI GCNGC 5 cut(s) 161, 200, 339, 436, 795
BmcAI AGTACT 1 cut(s) 657
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 62
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 169, 349
BmuI ACTGGG 1 cut(s) 499
BpuEI CTTGAG 2 cut(s) 572, 680
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 387, 747
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 254, 494
BseDI CCNNGG 2 cut(s) 387, 747
BseGI GGATG 4 cut(s) 340, 397, 472, 743
BseMII CTCAG 2 cut(s) 205, 290
BseNI ACTGG 2 cut(s) 254, 494
BseXI GCAGC 5 cut(s) 146, 210, 324, 421, 780
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 445, 616, 721
Bsp19I CCATGG 2 cut(s) 387, 747
BspACI CCGC 1 cut(s) 574
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 2 cut(s) 204, 291
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 1 cut(s) 716
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 2 cut(s) 254, 494
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 387, 747
BssMI GATC 3 cut(s) 445, 616, 721
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 387, 747
Bst6I CTCTTC 1 cut(s) 752
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 191, 243, 299
BstDSI CCRYGG 2 cut(s) 387, 747
BstF5I GGATG 4 cut(s) 340, 397, 472, 743
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 3 cut(s) 448, 619, 724
BstMBI GATC 3 cut(s) 445, 616, 721
BstV1I GCAGC 5 cut(s) 146, 210, 324, 421, 780
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 1 cut(s) 472
BtgI CCRYGG 2 cut(s) 387, 747
BtsCI GGATG 4 cut(s) 340, 397, 472, 743
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 656
CviAII CATG 5 cut(s) 84, 133, 388, 748, 777
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 3 cut(s) 191, 243, 299
DpnI GATC 3 cut(s) 447, 618, 723
DpnII GATC 3 cut(s) 445, 616, 721
Eam1104I CTCTTC 1 cut(s) 752
EarI CTCTTC 1 cut(s) 752
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 387, 747
Eco24I GRGCYC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 774
Eco53kI GAGCTC 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 240
EcoRV GATATC 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 387, 747
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 2 cut(s) 387, 747
FaeI CATG 5 cut(s) 87, 136, 391, 751, 780
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 218
FatI CATG 5 cut(s) 83, 132, 387, 747, 776
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 160, 199, 338, 435, 794
FokI GGATG 4 cut(s) 327, 404, 479, 730
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 160, 199, 338, 435, 794
FspBI CTAG 2 cut(s) 213, 782
GlaI GCGC 1 cut(s) 197
GluI GCNGC 5 cut(s) 160, 199, 338, 435, 794
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 64
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 5 cut(s) 87, 136, 391, 751, 780
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 5 cut(s) 295, 350, 378, 525, 609
HpaII CCGG 1 cut(s) 64
Hpy166II GTNNAC 4 cut(s) 69, 285, 317, 403
Hpy188I TCNGA 3 cut(s) 300, 369, 621
Hpy188III TCNNGA 2 cut(s) 142, 235
Hpy8I GTNNAC 4 cut(s) 69, 285, 317, 403
HpyAV CCTTC 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 7 cut(s) 340, 414, 437, 454, 555, 568, 769
HpyF3I CTNAG 3 cut(s) 191, 243, 299
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 87, 136, 391, 751, 780
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 445, 616, 721
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 5 cut(s) 146, 210, 324, 421, 780
LweI GCATC 2 cut(s) 169, 349
MaeI CTAG 2 cut(s) 213, 782
MaeII ACGT 1 cut(s) 231
MalI GATC 3 cut(s) 447, 618, 723
MboI GATC 3 cut(s) 445, 616, 721
MboII GAAGA 3 cut(s) 455, 766, 769
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 8 cut(s) 4, 13, 263, 303, 409, 764, 785, 798
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 8 cut(s) 97, 110, 457, 478, 512, 615, 735, 753
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 4 cut(s) 249, 578, 627, 788
MslI CAYNNNNRTG 3 cut(s) 131, 478, 504
MspI CCGG 1 cut(s) 64
NcoI CCATGG 2 cut(s) 387, 747
NdeII GATC 3 cut(s) 445, 616, 721
NlaIII CATG 5 cut(s) 87, 136, 391, 751, 780
NlaIV GGNNCC 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 5 cut(s) 295, 350, 378, 525, 609
PkrI GCNGC 5 cut(s) 161, 200, 339, 436, 795
Psp124BI GAGCTC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 470
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 3 cut(s) 131, 478, 504
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 249, 578, 627, 788
SatI GCNGC 5 cut(s) 160, 199, 338, 435, 794
Sau3AI GATC 3 cut(s) 445, 616, 721
Sau96I GGNCC 1 cut(s) 470
ScaI AGTACT 1 cut(s) 657
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 2 cut(s) 169, 349
SmiMI CAYNNNNRTG 3 cut(s) 131, 478, 504
SmlI CTYRAG 2 cut(s) 587, 659
SmoI CTYRAG 2 cut(s) 587, 659
Sse9I AATT 8 cut(s) 4, 13, 263, 303, 409, 764, 785, 798
SsiI CCGC 1 cut(s) 574
SspMI CTAG 2 cut(s) 213, 782
SstI GAGCTC 1 cut(s) 242
StyI CCWWGG 2 cut(s) 387, 747
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 348
TasI AATT 8 cut(s) 4, 13, 263, 303, 409, 764, 785, 798
TatI WGTACW 1 cut(s) 655
TfiI GAWTC 5 cut(s) 295, 350, 378, 525, 609
Tru1I TTAA 4 cut(s) 249, 578, 627, 788
Tru9I TTAA 4 cut(s) 249, 578, 627, 788
TseI GCWGC 5 cut(s) 159, 198, 337, 434, 793
TspDTI ATGAA 7 cut(s) 17, 121, 137, 601, 612, 684, 793
TspGWI ACGGA 1 cut(s) 333
XapI RAATTY 2 cut(s) 263, 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 213, 782
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.