RchiOBHm_Chr2g0110161

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002361
Physical Location & Seq
Reverse (-)
21585415 .. 21587153
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGTGTGCTAAGGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCAGAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTATTGTTTATACCAATCGCCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCAATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAATCATGAGCTTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTAAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCGTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGGTAATCCACTTATCAGTCAATTCATTTCAGTATATTGGTTTCATATCTTTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

9.54

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 31 - 94 5.7e-08 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 412
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 138, 485
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 5 cut(s) 199, 208, 259, 265, 380
AluI AGCT 5 cut(s) 199, 208, 259, 265, 380
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 2 cut(s) 412, 414
AspS9I GGNCC 3 cut(s) 50, 179, 428
AsuC2I CCSGG 1 cut(s) 140
AvaII GGWCC 3 cut(s) 50, 179, 428
BbvI GCAGC 1 cut(s) 472
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 2 cut(s) 416, 458
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 3 cut(s) 50, 179, 428
BmgT120I GGNCC 3 cut(s) 50, 179, 428
BmiI GGNNCC 2 cut(s) 51, 144
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 292, 366
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 485
BseDI CCNNGG 2 cut(s) 292, 366
BseLI CCNNNNNNNGG 2 cut(s) 138, 485
BsePI GCGCGC 1 cut(s) 410
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 138, 485
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 481
Bsp143I GATC 2 cut(s) 450, 475
BspACI CCGC 1 cut(s) 486
BspFNI CGCG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 51, 144
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 292, 366
BssHII GCGCGC 1 cut(s) 410
BssMI GATC 2 cut(s) 450, 475
BssT1I CCWWGG 2 cut(s) 292, 366
Bst4CI ACNGT 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 2 cut(s) 412, 414
BstKTI GATC 2 cut(s) 453, 478
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 450, 475
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 2 cut(s) 416, 458
BstUI CGCG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 412
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 412, 414
Cfr13I GGNCC 3 cut(s) 50, 179, 428
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 236, 254
CviJI RGCY 7 cut(s) 168, 199, 208, 259, 265, 344, 380
CviKI_1 RGCY 7 cut(s) 168, 199, 208, 259, 265, 344, 380
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 452, 477
DpnII GATC 2 cut(s) 450, 475
Eco130I CCWWGG 2 cut(s) 292, 366
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 50, 179, 428
Eco57I CTGAAG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 292, 366
ErhI CCWWGG 2 cut(s) 292, 366
FaeI CATG 2 cut(s) 239, 257
FaqI GGGAC 1 cut(s) 481
FatI CATG 2 cut(s) 235, 253
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 461
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 411, 413
GluI GCNGC 1 cut(s) 461
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 392
HhaI GCGC 2 cut(s) 412, 414
Hin1II CATG 2 cut(s) 239, 257
Hin6I GCGC 2 cut(s) 410, 412
HinP1I GCGC 2 cut(s) 410, 412
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 232, 371
HpaII CCGG 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 229, 254
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 92, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 2 cut(s) 239, 257
HspAI GCGC 2 cut(s) 410, 412
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 2 cut(s) 450, 475
LpnPI CCDG 5 cut(s) 66, 152, 159, 326, 404
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 480
MalI GATC 2 cut(s) 452, 477
MboI GATC 2 cut(s) 450, 475
MluCI AATT 6 cut(s) 104, 117, 159, 190, 446, 529
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 5 cut(s) 39, 58, 303, 441, 476
MseI TTAA 4 cut(s) 116, 195, 272, 444
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 450, 475
NlaIII CATG 2 cut(s) 239, 257
NlaIV GGNNCC 2 cut(s) 51, 144
PagI TCATGA 1 cut(s) 253
PauI GCGCGC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 232, 371
PkrI GCNGC 1 cut(s) 462
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 51, 144
PspPI GGNCC 3 cut(s) 50, 179, 428
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 462
PteI GCGCGC 1 cut(s) 410
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 4 cut(s) 116, 195, 272, 444
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 450, 475
Sau96I GGNCC 3 cut(s) 50, 179, 428
ScrFI CCNGG 1 cut(s) 140
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 416, 458
SinI GGWCC 3 cut(s) 50, 179, 428
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 6 cut(s) 104, 117, 159, 190, 446, 529
SsiI CCGC 1 cut(s) 486
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 2 cut(s) 292, 366
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 77
TasI AATT 6 cut(s) 104, 117, 159, 190, 446, 529
TfiI GAWTC 2 cut(s) 232, 371
Tru1I TTAA 4 cut(s) 116, 195, 272, 444
Tru9I TTAA 4 cut(s) 116, 195, 272, 444
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 2 cut(s) 522, 541
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 3 cut(s) 50, 179, 428
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.