RchiOBHm_Chr2g0129251
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000806
Physical Location & Seq
Forward (+)
44938593 .. 44939237
645 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGGACGCAGGAAGATAGAAATCGAGAAAATCAGTAACAAGAACTACCTAATGGCCACATTCTCTAAGCGGCGAAAGGGTCTGTTTCACAAAGCCAGTGAGTTTTGCAGGTTATCCGGTGCCGAAATCGCCATCGTTGTCTTTTCGCCAGGTGACCGTGTTTACCGGTTTGGTCACCCTTCAGCAGACTCCATCATTGACCGGTATGATGATCCGCGAACCAAAAATAACAATAATAAGGGCACACGAGAGTTTCCGTATACACTTGACGACGAAGGCAATGAAGCTCATGATGATGATTTGGCCGGCAGCAAGCTTGGAAAAGAGGCAGCTGATGGTAAGGATGAGCTTGGAAAGGCCAGGTTTTGGTGGGATAATCTGCCTATTGAAGATATGGGACTAAAACAACTTGAGCAATATAAAAGTTGCTTAGAAGTTATAAGAAACGAGCTGGCATATGAATTACATGAGACGAAGAGAAGAGAATCACACACCAAAGATTTTTTGAGTTTGATTGGCTTCAGTACTAGTACTTCTACTTCTGATCCAGTAAGAGAACGCAACTGTGATATTGTAGAAGAACACCAAGCACAGCTTTCATGGAGCAGCATGACGAGCGCAATTAACCCAAATTTTACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

214

Amino Acids

24.51

Weight (kDa)

5.92

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 4.6e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 366
AccI GTMKAC 1 cut(s) 260
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 70, 215
AclWI GGATC 2 cut(s) 206, 539
AcoI YGGCCR 2 cut(s) 54, 303
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 2 cut(s) 165, 505
AfaI GTAC 2 cut(s) 526, 532
AfiI CCNNNNNNNGG 1 cut(s) 366
AgeI ACCGGT 2 cut(s) 165, 201
AgsI TTSAA 1 cut(s) 389
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 2 cut(s) 148, 359
AluBI AGCT 6 cut(s) 287, 316, 332, 349, 451, 595
AluI AGCT 6 cut(s) 287, 316, 332, 349, 451, 595
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 206, 539
AoxI GGCC 3 cut(s) 54, 303, 357
ApeKI GCWGC 3 cut(s) 309, 329, 606
ApoI RAATTY 1 cut(s) 631
AsiGI ACCGGT 2 cut(s) 165, 201
AspLEI GCGC 1 cut(s) 620
AsuHPI GGTGA 2 cut(s) 164, 167
BaeGI GKGCMC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 119
BarI GAAGNNNNNNTAC 4 cut(s) 517, 523, 549, 555
BauI CACGAG 1 cut(s) 246
BbvI GCAGC 3 cut(s) 321, 341, 618
BccI CCATC 3 cut(s) 140, 200, 329
BciT130I CCWGG 2 cut(s) 150, 361
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 99
BisI GCNGC 4 cut(s) 71, 310, 330, 607
BlsI GCNGC 4 cut(s) 72, 311, 331, 608
BmcAI AGTACT 2 cut(s) 526, 532
Bme1390I CCNGG 2 cut(s) 150, 361
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 150, 361
BpuEI CTTGAG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 20
BsaWI WCCGGW 3 cut(s) 116, 165, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 3 cut(s) 165, 201, 305
Bse1I ACTGG 2 cut(s) 96, 548
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 2 cut(s) 150, 361
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 96, 548
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 3 cut(s) 321, 341, 618
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 56, 305, 359
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 2 cut(s) 165, 201
BsiSI CCGG 4 cut(s) 117, 166, 202, 306
BslFI GGGAC 2 cut(s) 18, 411
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 464
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 18, 411
BsnI GGCC 3 cut(s) 56, 305, 359
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 211, 544
BspACI CCGC 2 cut(s) 70, 215
BspANI GGCC 3 cut(s) 56, 305, 359
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 206, 539
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 3 cut(s) 165, 201, 305
BsrI ACTGG 2 cut(s) 96, 548
BssAI RCCGGY 3 cut(s) 165, 201, 305
BssMI GATC 2 cut(s) 211, 544
BssNAI GTATAC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 246
Bst1107I GTATAC 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 150, 361
Bst4CI ACNGT 2 cut(s) 158, 566
Bst6I CTCTTC 2 cut(s) 470, 475
BstC8I GCNNGC 3 cut(s) 307, 314, 453
BstDEI CTNAG 2 cut(s) 66, 430
BstEII GGTNACC 2 cut(s) 152, 173
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 2 cut(s) 214, 547
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 2 cut(s) 211, 544
BstMWI GCNNNNNNNGC 2 cut(s) 128, 615
BstNI CCWGG 2 cut(s) 150, 361
BstPI GGTNACC 2 cut(s) 152, 173
BstSCI CCNGG 2 cut(s) 148, 359
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 321, 341, 618
BstZ17I GTATAC 1 cut(s) 261
BsuRI GGCC 3 cut(s) 56, 305, 359
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 307, 314, 453
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 620
Cfr10I RCCGGY 3 cut(s) 165, 201, 305
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 525, 531
CspAI ACCGGT 2 cut(s) 165, 201
CviAII CATG 4 cut(s) 290, 467, 600, 610
CviQI GTAC 2 cut(s) 525, 531
DdeI CTNAG 2 cut(s) 66, 430
DpnI GATC 2 cut(s) 213, 546
DpnII GATC 2 cut(s) 211, 544
EaeI YGGCCR 2 cut(s) 54, 303
Eam1104I CTCTTC 2 cut(s) 470, 475
EarI CTCTTC 2 cut(s) 470, 475
Eco57I CTGAAG 2 cut(s) 165, 505
Eco91I GGTNACC 2 cut(s) 152, 173
EcoO65I GGTNACC 2 cut(s) 152, 173
EcoRII CCWGG 2 cut(s) 148, 359
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 4 cut(s) 293, 470, 603, 613
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 2 cut(s) 18, 411
FatI CATG 4 cut(s) 289, 466, 599, 609
FauNDI CATATG 1 cut(s) 457
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 71, 310, 330, 607
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 4 cut(s) 71, 310, 330, 607
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 619
GluI GCNGC 4 cut(s) 71, 310, 330, 607
HaeIII GGCC 3 cut(s) 56, 305, 359
HapII CCGG 4 cut(s) 117, 166, 202, 306
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 293, 470, 603, 613
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 2 cut(s) 188, 485
HpaII CCGG 4 cut(s) 117, 166, 202, 306
HphI GGTGA 2 cut(s) 164, 167
Hpy166II GTNNAC 2 cut(s) 163, 261
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 2 cut(s) 25, 290
Hpy8I GTNNAC 2 cut(s) 163, 261
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 189, 269
HpyCH4III ACNGT 2 cut(s) 158, 566
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 615
HpyF3I CTNAG 2 cut(s) 66, 430
Hsp92II CATG 4 cut(s) 293, 470, 603, 613
HspAI GCGC 1 cut(s) 618
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 211, 544
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 3 cut(s) 321, 341, 618
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 35, 152, 173
MalI GATC 2 cut(s) 213, 546
MboI GATC 2 cut(s) 211, 544
MboII GAAGA 5 cut(s) 25, 401, 487, 492, 590
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 461, 621, 631
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 1 cut(s) 319
Mox20I TGGCCA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 624, 643
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 117, 166, 202, 306
MspR9I CCNGG 2 cut(s) 150, 361
MvaI CCWGG 2 cut(s) 150, 361
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 128, 615
NaeI GCCGGC 1 cut(s) 307
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 211, 544
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 4 cut(s) 293, 470, 603, 613
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 152, 173
PagI TCATGA 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 366
PinAI ACCGGT 2 cut(s) 165, 201
PkrI GCNGC 4 cut(s) 72, 311, 331, 608
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 148, 359
PspEI GGTNACC 2 cut(s) 152, 173
PspGI CCWGG 2 cut(s) 148, 359
PspN4I GGNNCC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 526, 532
RsaNI GTAC 2 cut(s) 525, 531
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 2 cut(s) 624, 643
SatI GCNGC 4 cut(s) 71, 310, 330, 607
Sau3AI GATC 2 cut(s) 211, 544
ScaI AGTACT 2 cut(s) 526, 532
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 150, 361
SduI GDGCHC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 3 cut(s) 461, 621, 631
SsiI CCGC 2 cut(s) 70, 215
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 148, 359
TaaI ACNGT 2 cut(s) 158, 566
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 461, 621, 631
TatI WGTACW 2 cut(s) 524, 530
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 2 cut(s) 624, 643
Tru9I TTAA 2 cut(s) 624, 643
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 152, 173
TseI GCWGC 3 cut(s) 309, 329, 606
Tsp45I GTSAC 2 cut(s) 152, 173
TspDTI ATGAA 3 cut(s) 297, 474, 588
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 1 cut(s) 528
ZrmI AGTACT 2 cut(s) 526, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.