Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002156

Physical Location & Seq

Genomic Coordinates Reverse (-)

6786454 .. 6787506

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTTTGCTAGATGTGGTGACCCTCAAAGTGTAATGAAGGTGTTTGATAACATGGCAAGAAGAGATTTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGCAAGGAAATGGGGAGCGAGCTATAGAGCTTTTTGATGACAGGCTTAAGCAAGGGGTGAAGCCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGTCATGTTGGTCTTTTGGTCTTCTGGATATCATTGTTTTTTCATTTGTTGGTTTTTCTGAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

90

Amino Acids

10.09

Weight (kDa)

6.02

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	24 - 69	3.7e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002156)

Species	Orthologous Gene IDs
malus_domestica	MD04G1086800.v1.1 MD15G1179900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319101 RchiOBHm_Chr1g0328871 RchiOBHm_Chr1g0329071 RchiOBHm_Chr1g0329121 RchiOBHm_Chr1g0329131 RchiOBHm_Chr3g0482401 RchiOBHm_Chr4g0386521 RchiOBHm_Chr4g0386661 RchiOBHm_Chr4g0386761 RchiOBHm_Chr4g0386771 RchiOBHm_Chr4g0386901 RchiOBHm_Chr4g0387051 RchiOBHm_Chr4g0387251 RchiOBHm_Chr4g0387261 RchiOBHm_Chr4g0389041 RchiOBHm_Chr4g0389121 RchiOBHm_Chr4g0389181 RchiOBHm_Chr4g0389271 RchiOBHm_Chr4g0389371 RchiOBHm_Chr4g0394511
rosa_laevigata	RLG00000009193 RLG00000009989 RLG00000009995 RLG00000010148 RLG00000010150 RLG00000010159
rosa_multiflora	Rmu_co8024538.1_g000001 Rmu_sc0002221.1_g000001 Rmu_sc0005233.1_g000001 Rmu_sc0006648.1_g000009 Rmu_sc0008380.1_g000013 Rmu_sc0018886.1_g000001 Rmu_sc0040950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335380
rosa_rugosa	Rorug03G0307400 Rorug03G0308300 Rorug03G0322800 Rorug03G0365000.1 Rorug03G0365100.1 Rorug05G0232600
rosa_samantha	Rh4CG016200
rosa_wichuraiana	Rw4G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	1 cut(s)	192
AflII	CTTAAG	1 cut(s)	149
AluBI	AGCT	3 cut(s)	125, 133, 267
AluI	AGCT	3 cut(s)	125, 133, 267
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	29, 172
BalI	TGGCCA	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	123, 202
BstDEI	CTNAG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 92
BstNSI	RCATGY	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	123, 202
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	4 cut(s)	52, 103, 201, 209
CviJI	RGCY	7 cut(s)	86, 101, 125, 133, 148, 166, 267
CviKI_1	RGCY	7 cut(s)	86, 101, 125, 133, 148, 166, 267
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	234
FaeI	CATG	4 cut(s)	55, 106, 204, 212
FaiI	YATR	5 cut(s)	53, 104, 128, 202, 210
FatI	CATG	4 cut(s)	51, 102, 200, 208
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	55, 106, 204, 212
HphI	GGTGA	2 cut(s)	29, 172
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	106, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 92
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	55, 106, 204, 212
LmnI	GCTCC	2 cut(s)	92, 118
LpnPI	CCDG	3 cut(s)	130, 180, 214
Lsp1109I	GCAGC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	72, 217
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	2 cut(s)	150, 271
Msp20I	TGGCCA	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	80, 92
NlaIII	CATG	4 cut(s)	55, 106, 204, 212
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	150, 271
SatI	GCNGC	1 cut(s)	84
ScaI	AGTACT	1 cut(s)	192
SetI	ASST	4 cut(s)	42, 127, 135, 269
SfcI	CTRYAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	9
TatI	WGTACW	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	150, 271
Tru9I	TTAA	2 cut(s)	150, 271
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	50, 186, 236
Vha464I	CTTAAG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.