Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR | PF01535 | 24 - 53 | 9.9e-07 | PPR repeat |
| PPR_2 | PF13041 | 52 - 101 | 7.3e-07 | PPR repeat family |
| PPR | PF01535 | 55 - 83 | 3.3e-06 | PPR repeat |
| PPR | PF01535 | 157 - 185 | 7.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 185 - 232 | 8.9e-11 | PPR repeat family |
| PPR | PF01535 | 187 - 213 | 2.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 287 - 334 | 3.8e-11 | PPR repeat family |
| PPR | PF01535 | 289 - 319 | 6.7e-08 | PPR repeat |
| E_motif | PF20431 | 404 - 466 | 6.4e-16 | E motif |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 269 |
| Acc36I | ACCTGC | 3 cut(s) | 269, 331, 820 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1389 |
| AccBSI | CCGCTC | 1 cut(s) | 1378 |
| AciI | CCGC | 5 cut(s) | 15, 241, 807, 1170, 1378 |
| AcoI | YGGCCR | 2 cut(s) | 450, 1239 |
| AcsI | RAATTY | 2 cut(s) | 64, 726 |
| AcuI | CTGAAG | 3 cut(s) | 137, 1329, 1491 |
| AfaI | GTAC | 2 cut(s) | 5, 71 |
| AfeI | AGCGCT | 1 cut(s) | 615 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 201, 202, 1389 |
| AflII | CTTAAG | 1 cut(s) | 710 |
| AflIII | ACRYGT | 2 cut(s) | 792, 1363 |
| AgsI | TTSAA | 8 cut(s) | 10, 262, 647, 838, 935, 1039, 1403, 1474 |
| AjnI | CCWGG | 1 cut(s) | 167 |
| AleI | CACNNNNGTG | 1 cut(s) | 179 |
| Alw26I | GTCTC | 2 cut(s) | 1336, 1354 |
| Aor51HI | AGCGCT | 1 cut(s) | 615 |
| AoxI | GGCC | 6 cut(s) | 123, 450, 653, 819, 1239, 1380 |
| ApeKI | GCWGC | 1 cut(s) | 1438 |
| ApoI | RAATTY | 2 cut(s) | 64, 726 |
| AspLEI | GCGC | 1 cut(s) | 616 |
| AspS9I | GGNCC | 4 cut(s) | 124, 474, 819, 1380 |
| AsuC2I | CCSGG | 2 cut(s) | 127, 557 |
| AsuHPI | GGTGA | 4 cut(s) | 193, 518, 860, 1351 |
| AsuNHI | GCTAGC | 1 cut(s) | 521 |
| AvaII | GGWCC | 1 cut(s) | 474 |
| BauI | CACGAG | 1 cut(s) | 73 |
| BbsI | GAAGAC | 1 cut(s) | 942 |
| BbvI | GCAGC | 1 cut(s) | 1425 |
| BccI | CCATC | 4 cut(s) | 412, 442, 1314, 1486 |
| BceAI | ACGGC | 2 cut(s) | 437, 1361 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 355, 389 |
| BciT130I | CCWGG | 1 cut(s) | 169 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcnI | CCSGG | 2 cut(s) | 127, 557 |
| BcoDI | GTCTC | 2 cut(s) | 1336, 1354 |
| BfaI | CTAG | 6 cut(s) | 429, 522, 591, 696, 1013, 1528 |
| BfoI | RGCGCY | 1 cut(s) | 617 |
| BfrI | CTTAAG | 1 cut(s) | 710 |
| BfuAI | ACCTGC | 3 cut(s) | 269, 331, 820 |
| BisI | GCNGC | 3 cut(s) | 16, 808, 1439 |
| BlsI | GCNGC | 3 cut(s) | 17, 809, 1440 |
| Bme1390I | CCNGG | 3 cut(s) | 127, 169, 557 |
| Bme18I | GGWCC | 1 cut(s) | 474 |
| BmgT120I | GGNCC | 4 cut(s) | 124, 474, 819, 1380 |
| BmiI | GGNNCC | 2 cut(s) | 820, 1263 |
| BmrFI | CCNGG | 3 cut(s) | 127, 169, 557 |
| BmsI | GCATC | 7 cut(s) | 19, 385, 415, 531, 627, 1450, 1492 |
| BmtI | GCTAGC | 1 cut(s) | 525 |
| BpiI | GAAGAC | 1 cut(s) | 942 |
| Bpu10I | CCTNAGC | 1 cut(s) | 892 |
| BpuMI | CCSGG | 2 cut(s) | 127, 557 |
| BsaJI | CCNNGG | 2 cut(s) | 177, 1210 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 405, 435 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 201, 202, 1389 |
| Bse118I | RCCGGY | 3 cut(s) | 250, 961, 1434 |
| Bse1I | ACTGG | 1 cut(s) | 486 |
| Bse3DI | GCAATG | 1 cut(s) | 920 |
| BseBI | CCWGG | 1 cut(s) | 169 |
| BseDI | CCNNGG | 2 cut(s) | 177, 1210 |
| BseGI | GGATG | 8 cut(s) | 163, 400, 466, 546, 1124, 1360, 1441, 1501 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 201, 202, 1389 |
| BseMI | GCAATG | 1 cut(s) | 920 |
| BseMII | CTCAG | 3 cut(s) | 141, 537, 1479 |
| BseNI | ACTGG | 1 cut(s) | 486 |
| BseXI | GCAGC | 1 cut(s) | 1425 |
| BseYI | CCCAGC | 2 cut(s) | 353, 1225 |
| BsgI | GTGCAG | 1 cut(s) | 1037 |
| BshFI | GGCC | 6 cut(s) | 125, 452, 655, 821, 1241, 1382 |
| BsiSI | CCGG | 6 cut(s) | 127, 251, 557, 822, 962, 1435 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 201, 202, 1389 |
| BsmAI | GTCTC | 2 cut(s) | 1336, 1354 |
| BsmBI | CGTCTC | 1 cut(s) | 1336 |
| BsmI | GAATGC | 1 cut(s) | 1189 |
| BsnI | GGCC | 6 cut(s) | 125, 452, 655, 821, 1241, 1382 |
| Bsp143I | GATC | 3 cut(s) | 535, 658, 1099 |
| Bsp19I | CCATGG | 2 cut(s) | 177, 1210 |
| BspACI | CCGC | 5 cut(s) | 15, 241, 807, 1170, 1378 |
| BspANI | GGCC | 6 cut(s) | 125, 452, 655, 821, 1241, 1382 |
| BspCNI | CTCAG | 3 cut(s) | 142, 538, 1478 |
| BspLI | GGNNCC | 2 cut(s) | 820, 1263 |
| BspMI | ACCTGC | 3 cut(s) | 269, 331, 820 |
| BspOI | GCTAGC | 1 cut(s) | 525 |
| BspTI | CTTAAG | 1 cut(s) | 710 |
| BsrBI | CCGCTC | 1 cut(s) | 1378 |
| BsrDI | GCAATG | 1 cut(s) | 920 |
| BsrFI | RCCGGY | 3 cut(s) | 250, 961, 1434 |
| BsrI | ACTGG | 1 cut(s) | 486 |
| BssAI | RCCGGY | 3 cut(s) | 250, 961, 1434 |
| BssECI | CCNNGG | 2 cut(s) | 177, 1210 |
| BssMI | GATC | 3 cut(s) | 535, 658, 1099 |
| BssSI | CACGAG | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 2 cut(s) | 177, 1210 |
| Bst2BI | CACGAG | 1 cut(s) | 73 |
| Bst2UI | CCWGG | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 3 cut(s) | 292, 1426, 1479 |
| BstAFI | CTTAAG | 1 cut(s) | 710 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 626, 1447 |
| BstC8I | GCNNGC | 8 cut(s) | 34, 330, 523, 618, 1090, 1168, 1380, 1416 |
| BstDEI | CTNAG | 4 cut(s) | 150, 546, 892, 1465 |
| BstDSI | CCRYGG | 2 cut(s) | 177, 1210 |
| BstF5I | GGATG | 8 cut(s) | 163, 400, 466, 546, 1124, 1360, 1441, 1501 |
| BstH2I | RGCGCY | 1 cut(s) | 617 |
| BstHHI | GCGC | 1 cut(s) | 616 |
| BstKTI | GATC | 3 cut(s) | 538, 661, 1102 |
| BstMAI | GTCTC | 2 cut(s) | 1336, 1354 |
| BstMBI | GATC | 3 cut(s) | 535, 658, 1099 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 247, 325, 613, 626, 701, 1024, 1447 |
| BstNI | CCWGG | 1 cut(s) | 169 |
| BstNSI | RCATGY | 5 cut(s) | 101, 796, 1092, 1367, 1418 |
| BstSCI | CCNGG | 3 cut(s) | 125, 167, 555 |
| BstV1I | GCAGC | 1 cut(s) | 1425 |
| BstV2I | GAAGAC | 1 cut(s) | 942 |
| BsuRI | GGCC | 6 cut(s) | 125, 452, 655, 821, 1241, 1382 |
| BtgI | CCRYGG | 2 cut(s) | 177, 1210 |
| BtgZI | GCGATG | 1 cut(s) | 33 |
| BtsCI | GGATG | 8 cut(s) | 163, 400, 466, 546, 1124, 1360, 1441, 1501 |
| BtsIMutI | CAGTG | 2 cut(s) | 479, 1422 |
| BveI | ACCTGC | 3 cut(s) | 269, 331, 820 |
| Cac8I | GCNNGC | 8 cut(s) | 34, 330, 523, 618, 1090, 1168, 1380, 1416 |
| CfoI | GCGC | 1 cut(s) | 616 |
| Cfr10I | RCCGGY | 3 cut(s) | 250, 961, 1434 |
| Cfr13I | GGNCC | 4 cut(s) | 124, 474, 819, 1380 |
| Csp6I | GTAC | 2 cut(s) | 4, 70 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 961, 996 |
| CviQI | GTAC | 2 cut(s) | 4, 70 |
| DdeI | CTNAG | 4 cut(s) | 150, 546, 892, 1465 |
| DpnI | GATC | 3 cut(s) | 537, 660, 1101 |
| DpnII | GATC | 3 cut(s) | 535, 658, 1099 |
| EaeI | YGGCCR | 2 cut(s) | 450, 1239 |
| Eco130I | CCWWGG | 2 cut(s) | 177, 1210 |
| Eco147I | AGGCCT | 1 cut(s) | 655 |
| Eco47I | GGWCC | 1 cut(s) | 474 |
| Eco47III | AGCGCT | 1 cut(s) | 615 |
| Eco57I | CTGAAG | 3 cut(s) | 137, 1329, 1491 |
| EcoRII | CCWGG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 2 cut(s) | 177, 1210 |
| EcoT22I | ATGCAT | 2 cut(s) | 1090, 1189 |
| ErhI | CCWWGG | 2 cut(s) | 177, 1210 |
| Esp3I | CGTCTC | 1 cut(s) | 1336 |
| FauI | CCCGC | 1 cut(s) | 1371 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 3 cut(s) | 16, 808, 1439 |
| FokI | GGATG | 8 cut(s) | 170, 407, 473, 553, 1131, 1367, 1428, 1508 |
| Fsp4HI | GCNGC | 3 cut(s) | 16, 808, 1439 |
| FspBI | CTAG | 6 cut(s) | 429, 522, 591, 696, 1013, 1528 |
| GlaI | GCGC | 1 cut(s) | 615 |
| GluI | GCNGC | 3 cut(s) | 16, 808, 1439 |
| GsaI | CCCAGC | 2 cut(s) | 357, 1229 |
| HaeII | RGCGCY | 1 cut(s) | 617 |
| HaeIII | GGCC | 6 cut(s) | 125, 452, 655, 821, 1241, 1382 |
| HapII | CCGG | 6 cut(s) | 127, 251, 557, 822, 962, 1435 |
| HhaI | GCGC | 1 cut(s) | 616 |
| Hin6I | GCGC | 1 cut(s) | 614 |
| HinP1I | GCGC | 1 cut(s) | 614 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 2 cut(s) | 112, 1206 |
| HpaII | CCGG | 6 cut(s) | 127, 251, 557, 822, 962, 1435 |
| HphI | GGTGA | 4 cut(s) | 193, 518, 860, 1351 |
| Hpy166II | GTNNAC | 2 cut(s) | 666, 722 |
| Hpy188I | TCNGA | 3 cut(s) | 117, 540, 1432 |
| Hpy188III | TCNNGA | 2 cut(s) | 489, 1070 |
| Hpy8I | GTNNAC | 2 cut(s) | 666, 722 |
| HpyAV | CCTTC | 5 cut(s) | 112, 819, 1016, 1307, 1330 |
| HpyCH4III | ACNGT | 3 cut(s) | 292, 1426, 1479 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 247, 325, 613, 626, 701, 1024, 1447 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 546, 892, 1465 |
| HspAI | GCGC | 1 cut(s) | 614 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| Kzo9I | GATC | 3 cut(s) | 535, 658, 1099 |
| LmnI | GCTCC | 4 cut(s) | 129, 1261, 1282, 1324 |
| Lsp1109I | GCAGC | 1 cut(s) | 1425 |
| LweI | GCATC | 7 cut(s) | 19, 385, 415, 531, 627, 1450, 1492 |
| MaeI | CTAG | 6 cut(s) | 429, 522, 591, 696, 1013, 1528 |
| MaeIII | GTNAC | 2 cut(s) | 964, 1510 |
| MalI | GATC | 3 cut(s) | 537, 660, 1101 |
| MbiI | CCGCTC | 1 cut(s) | 1378 |
| MboI | GATC | 3 cut(s) | 535, 658, 1099 |
| MboII | GAAGA | 8 cut(s) | 115, 313, 562, 947, 1242, 1263, 1322, 1511 |
| MluCI | AATT | 4 cut(s) | 64, 726, 751, 1095 |
| MmeI | TCCRAC | 1 cut(s) | 1239 |
| Mph1103I | ATGCAT | 2 cut(s) | 1090, 1189 |
| MseI | TTAA | 4 cut(s) | 711, 740, 755, 1094 |
| MslI | CAYNNNNRTG | 3 cut(s) | 179, 881, 906 |
| MspCI | CTTAAG | 1 cut(s) | 710 |
| MspI | CCGG | 6 cut(s) | 127, 251, 557, 822, 962, 1435 |
| MspR9I | CCNGG | 3 cut(s) | 127, 169, 557 |
| Mva1269I | GAATGC | 1 cut(s) | 1189 |
| MvaI | CCWGG | 1 cut(s) | 169 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 247, 325, 613, 626, 701, 1024, 1447 |
| NciI | CCSGG | 2 cut(s) | 127, 557 |
| NcoI | CCATGG | 2 cut(s) | 177, 1210 |
| NdeII | GATC | 3 cut(s) | 535, 658, 1099 |
| NheI | GCTAGC | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 2 cut(s) | 820, 1263 |
| NsiI | ATGCAT | 2 cut(s) | 1090, 1189 |
| NspI | RCATGY | 5 cut(s) | 101, 796, 1092, 1367, 1418 |
| OliI | CACNNNNGTG | 1 cut(s) | 179 |
| PaeI | GCATGC | 2 cut(s) | 1092, 1418 |
| PaqCI | CACCTGC | 1 cut(s) | 269 |
| PceI | AGGCCT | 1 cut(s) | 655 |
| PciI | ACATGT | 2 cut(s) | 792, 1363 |
| PctI | GAATGC | 1 cut(s) | 1189 |
| PfeI | GAWTC | 2 cut(s) | 112, 1206 |
| PflFI | GACNNNGTC | 1 cut(s) | 941 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1389 |
| PfoI | TCCNGGA | 1 cut(s) | 167 |
| PkrI | GCNGC | 3 cut(s) | 17, 809, 1440 |
| PscI | ACATGT | 2 cut(s) | 792, 1363 |
| Psp6I | CCWGG | 1 cut(s) | 167 |
| PspFI | CCCAGC | 2 cut(s) | 353, 1225 |
| PspGI | CCWGG | 1 cut(s) | 167 |
| PspN4I | GGNNCC | 2 cut(s) | 820, 1263 |
| PspPI | GGNCC | 4 cut(s) | 124, 474, 819, 1380 |
| PsyI | GACNNNGTC | 1 cut(s) | 941 |
| RsaI | GTAC | 2 cut(s) | 5, 71 |
| RsaNI | GTAC | 2 cut(s) | 4, 70 |
| RseI | CAYNNNNRTG | 3 cut(s) | 179, 881, 906 |
| SaqAI | TTAA | 4 cut(s) | 711, 740, 755, 1094 |
| SatI | GCNGC | 3 cut(s) | 16, 808, 1439 |
| Sau3AI | GATC | 3 cut(s) | 535, 658, 1099 |
| Sau96I | GGNCC | 4 cut(s) | 124, 474, 819, 1380 |
| ScrFI | CCNGG | 3 cut(s) | 127, 169, 557 |
| SfaNI | GCATC | 7 cut(s) | 19, 385, 415, 531, 627, 1450, 1492 |
| SinI | GGWCC | 1 cut(s) | 474 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 179, 881, 906 |
| SmlI | CTYRAG | 1 cut(s) | 710 |
| SmoI | CTYRAG | 1 cut(s) | 710 |
| SphI | GCATGC | 2 cut(s) | 1092, 1418 |
| Sse9I | AATT | 4 cut(s) | 64, 726, 751, 1095 |
| SseBI | AGGCCT | 1 cut(s) | 655 |
| SsiI | CCGC | 5 cut(s) | 15, 241, 807, 1170, 1378 |
| SspMI | CTAG | 6 cut(s) | 429, 522, 591, 696, 1013, 1528 |
| StuI | AGGCCT | 1 cut(s) | 655 |
| StyD4I | CCNGG | 3 cut(s) | 125, 167, 555 |
| StyI | CCWWGG | 2 cut(s) | 177, 1210 |
| TaaI | ACNGT | 3 cut(s) | 292, 1426, 1479 |
| TaqI | TCGA | 7 cut(s) | 365, 380, 441, 789, 1111, 1146, 1295 |
| TasI | AATT | 4 cut(s) | 64, 726, 751, 1095 |
| TatI | WGTACW | 2 cut(s) | 3, 69 |
| TauI | GCSGC | 2 cut(s) | 18, 810 |
| TfiI | GAWTC | 2 cut(s) | 112, 1206 |
| Tru1I | TTAA | 4 cut(s) | 711, 740, 755, 1094 |
| Tru9I | TTAA | 4 cut(s) | 711, 740, 755, 1094 |
| TscAI | CASTG | 2 cut(s) | 486, 1429 |
| TseI | GCWGC | 1 cut(s) | 1438 |
| TspDTI | ATGAA | 5 cut(s) | 527, 624, 719, 1151, 1512 |
| TspRI | CASTG | 2 cut(s) | 486, 1429 |
| Tth111I | GACNNNGTC | 1 cut(s) | 941 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1389 |
| Vha464I | CTTAAG | 1 cut(s) | 710 |
| VpaK11BI | GGWCC | 1 cut(s) | 474 |
| XapI | RAATTY | 2 cut(s) | 64, 726 |
| XceI | RCATGY | 5 cut(s) | 101, 796, 1092, 1367, 1418 |
| XspI | CTAG | 6 cut(s) | 429, 522, 591, 696, 1013, 1528 |
| Zsp2I | ATGCAT | 2 cut(s) | 1090, 1189 |