RchiOBHm_Chr1g0323771

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
11227135 .. 11228982
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1530 bp
ATGTACTTCAAATGCGGCGATGAGGTTGATGCACGCAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGTTATCTGGGCATGTGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGATAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTATGCCCAGAGTGGGGATTGTAATGAGGCTTTGAGGTTTTATAGAGAGTTGCGGAGGTCGCCGGTTGGGTTGAATGAGTTTAGTTTTGCAGGTGTTTTGACTGTGTGTGTGAAGATGAGGGAATGGAAGCTTATTAGGCAGGCTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCGAATGTGGTGCTTTCGAGTTCGGTGGTGGATGCTTATGCCAAGTGTGGAGAGATGGTAGATGCTAGGAGATTGTTCGATGAGATGGCCGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTCGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGCGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGCTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAGAGATGATGCTGTTTCAAGTCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAATACGAAATAATTTAAGACCCAACATGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAGTTTGGGGGCCGGAAGGCAGGTTTTCAAGCTCATGGGTGATAAGCAAGACATCGTGTTATGGAACACAATGATGTCTGCCTTAGCACAGCATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACCTTTGTTGTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGGGCGTAGGATTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTGATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTGATGAGTTGATGAACCAGCTCGAAAATATGCCATGTAAAGCTGGCGGTCAAGTTTGGAATGCATTACTTGGTGTTTGTAGAATCCATGGAAATACAGAGCTGGGAAGAAAAGTGGCCGAACACCTTATTGAGTTGGAGCCTCAATCTTCTGCTCCCTATGTTTTGCTTTCGAGTATATATGCTGAAGAAGGTAGATGGGAGCTGGTAGAGAAGGTGAGACGGCTTATGGATGAGAGACATGTGAGGAAAGAGCGGGCCATTAGTTGGGTAGAAGTTGAAAGTAGAGTGCATGCTTTCACTGTATCAGACCGGCTGCATCCTCTGCAAGAGGAAATATACTCAGTTTTGAAACAGTTAGCTGACCAGATGGATGAAGATGCTTCAGTAACTAACGCCGAGAACTAG

Protein Analysis

509

Amino Acids

57.45

Weight (kDa)

6.19

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 24 - 53 9.9e-07 PPR repeat
PPR_2 PF13041 52 - 101 7.3e-07 PPR repeat family
PPR PF01535 55 - 83 3.3e-06 PPR repeat
PPR PF01535 157 - 185 7.5e-07 PPR repeat
PPR_2 PF13041 185 - 232 8.9e-11 PPR repeat family
PPR PF01535 187 - 213 2.5e-08 PPR repeat
PPR_2 PF13041 287 - 334 3.8e-11 PPR repeat family
PPR PF01535 289 - 319 6.7e-08 PPR repeat
E_motif PF20431 404 - 466 6.4e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 3 cut(s) 269, 331, 820
AccB7I CCANNNNNTGG 1 cut(s) 1389
AccBSI CCGCTC 1 cut(s) 1378
AciI CCGC 5 cut(s) 15, 241, 807, 1170, 1378
AcoI YGGCCR 2 cut(s) 450, 1239
AcsI RAATTY 2 cut(s) 64, 726
AcuI CTGAAG 3 cut(s) 137, 1329, 1491
AfaI GTAC 2 cut(s) 5, 71
AfeI AGCGCT 1 cut(s) 615
AfiI CCNNNNNNNGG 3 cut(s) 201, 202, 1389
AflII CTTAAG 1 cut(s) 710
AflIII ACRYGT 2 cut(s) 792, 1363
AgsI TTSAA 8 cut(s) 10, 262, 647, 838, 935, 1039, 1403, 1474
AjnI CCWGG 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 1336, 1354
Aor51HI AGCGCT 1 cut(s) 615
AoxI GGCC 6 cut(s) 123, 450, 653, 819, 1239, 1380
ApeKI GCWGC 1 cut(s) 1438
ApoI RAATTY 2 cut(s) 64, 726
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 4 cut(s) 124, 474, 819, 1380
AsuC2I CCSGG 2 cut(s) 127, 557
AsuHPI GGTGA 4 cut(s) 193, 518, 860, 1351
AsuNHI GCTAGC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 474
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 942
BbvI GCAGC 1 cut(s) 1425
BccI CCATC 4 cut(s) 412, 442, 1314, 1486
BceAI ACGGC 2 cut(s) 437, 1361
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 2 cut(s) 127, 557
BcoDI GTCTC 2 cut(s) 1336, 1354
BfaI CTAG 6 cut(s) 429, 522, 591, 696, 1013, 1528
BfoI RGCGCY 1 cut(s) 617
BfrI CTTAAG 1 cut(s) 710
BfuAI ACCTGC 3 cut(s) 269, 331, 820
BisI GCNGC 3 cut(s) 16, 808, 1439
BlsI GCNGC 3 cut(s) 17, 809, 1440
Bme1390I CCNGG 3 cut(s) 127, 169, 557
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 4 cut(s) 124, 474, 819, 1380
BmiI GGNNCC 2 cut(s) 820, 1263
BmrFI CCNGG 3 cut(s) 127, 169, 557
BmsI GCATC 7 cut(s) 19, 385, 415, 531, 627, 1450, 1492
BmtI GCTAGC 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 892
BpuMI CCSGG 2 cut(s) 127, 557
BsaJI CCNNGG 2 cut(s) 177, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 202, 1389
Bse118I RCCGGY 3 cut(s) 250, 961, 1434
Bse1I ACTGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 920
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 177, 1210
BseGI GGATG 8 cut(s) 163, 400, 466, 546, 1124, 1360, 1441, 1501
BseLI CCNNNNNNNGG 3 cut(s) 201, 202, 1389
BseMI GCAATG 1 cut(s) 920
BseMII CTCAG 3 cut(s) 141, 537, 1479
BseNI ACTGG 1 cut(s) 486
BseXI GCAGC 1 cut(s) 1425
BseYI CCCAGC 2 cut(s) 353, 1225
BsgI GTGCAG 1 cut(s) 1037
BshFI GGCC 6 cut(s) 125, 452, 655, 821, 1241, 1382
BsiSI CCGG 6 cut(s) 127, 251, 557, 822, 962, 1435
BslI CCNNNNNNNGG 3 cut(s) 201, 202, 1389
BsmAI GTCTC 2 cut(s) 1336, 1354
BsmBI CGTCTC 1 cut(s) 1336
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 6 cut(s) 125, 452, 655, 821, 1241, 1382
Bsp143I GATC 3 cut(s) 535, 658, 1099
Bsp19I CCATGG 2 cut(s) 177, 1210
BspACI CCGC 5 cut(s) 15, 241, 807, 1170, 1378
BspANI GGCC 6 cut(s) 125, 452, 655, 821, 1241, 1382
BspCNI CTCAG 3 cut(s) 142, 538, 1478
BspLI GGNNCC 2 cut(s) 820, 1263
BspMI ACCTGC 3 cut(s) 269, 331, 820
BspOI GCTAGC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 1378
BsrDI GCAATG 1 cut(s) 920
BsrFI RCCGGY 3 cut(s) 250, 961, 1434
BsrI ACTGG 1 cut(s) 486
BssAI RCCGGY 3 cut(s) 250, 961, 1434
BssECI CCNNGG 2 cut(s) 177, 1210
BssMI GATC 3 cut(s) 535, 658, 1099
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 177, 1210
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 292, 1426, 1479
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 2 cut(s) 626, 1447
BstC8I GCNNGC 8 cut(s) 34, 330, 523, 618, 1090, 1168, 1380, 1416
BstDEI CTNAG 4 cut(s) 150, 546, 892, 1465
BstDSI CCRYGG 2 cut(s) 177, 1210
BstF5I GGATG 8 cut(s) 163, 400, 466, 546, 1124, 1360, 1441, 1501
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 3 cut(s) 538, 661, 1102
BstMAI GTCTC 2 cut(s) 1336, 1354
BstMBI GATC 3 cut(s) 535, 658, 1099
BstMWI GCNNNNNNNGC 7 cut(s) 247, 325, 613, 626, 701, 1024, 1447
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 5 cut(s) 101, 796, 1092, 1367, 1418
BstSCI CCNGG 3 cut(s) 125, 167, 555
BstV1I GCAGC 1 cut(s) 1425
BstV2I GAAGAC 1 cut(s) 942
BsuRI GGCC 6 cut(s) 125, 452, 655, 821, 1241, 1382
BtgI CCRYGG 2 cut(s) 177, 1210
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 8 cut(s) 163, 400, 466, 546, 1124, 1360, 1441, 1501
BtsIMutI CAGTG 2 cut(s) 479, 1422
BveI ACCTGC 3 cut(s) 269, 331, 820
Cac8I GCNNGC 8 cut(s) 34, 330, 523, 618, 1090, 1168, 1380, 1416
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 3 cut(s) 250, 961, 1434
Cfr13I GGNCC 4 cut(s) 124, 474, 819, 1380
Csp6I GTAC 2 cut(s) 4, 70
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviQI GTAC 2 cut(s) 4, 70
DdeI CTNAG 4 cut(s) 150, 546, 892, 1465
DpnI GATC 3 cut(s) 537, 660, 1101
DpnII GATC 3 cut(s) 535, 658, 1099
EaeI YGGCCR 2 cut(s) 450, 1239
Eco130I CCWWGG 2 cut(s) 177, 1210
Eco147I AGGCCT 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 474
Eco47III AGCGCT 1 cut(s) 615
Eco57I CTGAAG 3 cut(s) 137, 1329, 1491
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 2 cut(s) 177, 1210
EcoT22I ATGCAT 2 cut(s) 1090, 1189
ErhI CCWWGG 2 cut(s) 177, 1210
Esp3I CGTCTC 1 cut(s) 1336
FauI CCCGC 1 cut(s) 1371
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 16, 808, 1439
FokI GGATG 8 cut(s) 170, 407, 473, 553, 1131, 1367, 1428, 1508
Fsp4HI GCNGC 3 cut(s) 16, 808, 1439
FspBI CTAG 6 cut(s) 429, 522, 591, 696, 1013, 1528
GlaI GCGC 1 cut(s) 615
GluI GCNGC 3 cut(s) 16, 808, 1439
GsaI CCCAGC 2 cut(s) 357, 1229
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 6 cut(s) 125, 452, 655, 821, 1241, 1382
HapII CCGG 6 cut(s) 127, 251, 557, 822, 962, 1435
HhaI GCGC 1 cut(s) 616
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 2 cut(s) 112, 1206
HpaII CCGG 6 cut(s) 127, 251, 557, 822, 962, 1435
HphI GGTGA 4 cut(s) 193, 518, 860, 1351
Hpy166II GTNNAC 2 cut(s) 666, 722
Hpy188I TCNGA 3 cut(s) 117, 540, 1432
Hpy188III TCNNGA 2 cut(s) 489, 1070
Hpy8I GTNNAC 2 cut(s) 666, 722
HpyAV CCTTC 5 cut(s) 112, 819, 1016, 1307, 1330
HpyCH4III ACNGT 3 cut(s) 292, 1426, 1479
HpyF10VI GCNNNNNNNGC 7 cut(s) 247, 325, 613, 626, 701, 1024, 1447
HpyF3I CTNAG 4 cut(s) 150, 546, 892, 1465
HspAI GCGC 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 3 cut(s) 535, 658, 1099
LmnI GCTCC 4 cut(s) 129, 1261, 1282, 1324
Lsp1109I GCAGC 1 cut(s) 1425
LweI GCATC 7 cut(s) 19, 385, 415, 531, 627, 1450, 1492
MaeI CTAG 6 cut(s) 429, 522, 591, 696, 1013, 1528
MaeIII GTNAC 2 cut(s) 964, 1510
MalI GATC 3 cut(s) 537, 660, 1101
MbiI CCGCTC 1 cut(s) 1378
MboI GATC 3 cut(s) 535, 658, 1099
MboII GAAGA 8 cut(s) 115, 313, 562, 947, 1242, 1263, 1322, 1511
MluCI AATT 4 cut(s) 64, 726, 751, 1095
MmeI TCCRAC 1 cut(s) 1239
Mph1103I ATGCAT 2 cut(s) 1090, 1189
MseI TTAA 4 cut(s) 711, 740, 755, 1094
MslI CAYNNNNRTG 3 cut(s) 179, 881, 906
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 6 cut(s) 127, 251, 557, 822, 962, 1435
MspR9I CCNGG 3 cut(s) 127, 169, 557
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 7 cut(s) 247, 325, 613, 626, 701, 1024, 1447
NciI CCSGG 2 cut(s) 127, 557
NcoI CCATGG 2 cut(s) 177, 1210
NdeII GATC 3 cut(s) 535, 658, 1099
NheI GCTAGC 1 cut(s) 521
NlaIV GGNNCC 2 cut(s) 820, 1263
NsiI ATGCAT 2 cut(s) 1090, 1189
NspI RCATGY 5 cut(s) 101, 796, 1092, 1367, 1418
OliI CACNNNNGTG 1 cut(s) 179
PaeI GCATGC 2 cut(s) 1092, 1418
PaqCI CACCTGC 1 cut(s) 269
PceI AGGCCT 1 cut(s) 655
PciI ACATGT 2 cut(s) 792, 1363
PctI GAATGC 1 cut(s) 1189
PfeI GAWTC 2 cut(s) 112, 1206
PflFI GACNNNGTC 1 cut(s) 941
PflMI CCANNNNNTGG 1 cut(s) 1389
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 3 cut(s) 17, 809, 1440
PscI ACATGT 2 cut(s) 792, 1363
Psp6I CCWGG 1 cut(s) 167
PspFI CCCAGC 2 cut(s) 353, 1225
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 820, 1263
PspPI GGNCC 4 cut(s) 124, 474, 819, 1380
PsyI GACNNNGTC 1 cut(s) 941
RsaI GTAC 2 cut(s) 5, 71
RsaNI GTAC 2 cut(s) 4, 70
RseI CAYNNNNRTG 3 cut(s) 179, 881, 906
SaqAI TTAA 4 cut(s) 711, 740, 755, 1094
SatI GCNGC 3 cut(s) 16, 808, 1439
Sau3AI GATC 3 cut(s) 535, 658, 1099
Sau96I GGNCC 4 cut(s) 124, 474, 819, 1380
ScrFI CCNGG 3 cut(s) 127, 169, 557
SfaNI GCATC 7 cut(s) 19, 385, 415, 531, 627, 1450, 1492
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 3 cut(s) 179, 881, 906
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 2 cut(s) 1092, 1418
Sse9I AATT 4 cut(s) 64, 726, 751, 1095
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 5 cut(s) 15, 241, 807, 1170, 1378
SspMI CTAG 6 cut(s) 429, 522, 591, 696, 1013, 1528
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 3 cut(s) 125, 167, 555
StyI CCWWGG 2 cut(s) 177, 1210
TaaI ACNGT 3 cut(s) 292, 1426, 1479
TaqI TCGA 7 cut(s) 365, 380, 441, 789, 1111, 1146, 1295
TasI AATT 4 cut(s) 64, 726, 751, 1095
TatI WGTACW 2 cut(s) 3, 69
TauI GCSGC 2 cut(s) 18, 810
TfiI GAWTC 2 cut(s) 112, 1206
Tru1I TTAA 4 cut(s) 711, 740, 755, 1094
Tru9I TTAA 4 cut(s) 711, 740, 755, 1094
TscAI CASTG 2 cut(s) 486, 1429
TseI GCWGC 1 cut(s) 1438
TspDTI ATGAA 5 cut(s) 527, 624, 719, 1151, 1512
TspRI CASTG 2 cut(s) 486, 1429
Tth111I GACNNNGTC 1 cut(s) 941
Van91I CCANNNNNTGG 1 cut(s) 1389
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 64, 726
XceI RCATGY 5 cut(s) 101, 796, 1092, 1367, 1418
XspI CTAG 6 cut(s) 429, 522, 591, 696, 1013, 1528
Zsp2I ATGCAT 2 cut(s) 1090, 1189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.