Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001317

Physical Location & Seq

Genomic Coordinates Reverse (-)

11721725 .. 11722663

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGTCGGACTGGATCCCGAGGACAGGTGACTCAGGTTAAAGTCAAGTTTCTGGACGATCAGAACCGGCATATCATGAGGAATGTCAAAGGACCAGTGAGGGAGGGAGATGTTCTTACCTTGCTCGAGTCTGAAAGGGAAGCGAGGAGGTTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S28e

Protein Analysis

52

Amino Acids

6.03

Weight (kDa)

11.18

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	1 - 51	1.3e-27	Ribosomal protein S28e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10090 AT5G03850 AT5G64140
fragaria_vesca	FvH4_2g25780 FvH4_6g21240 FvH4_6g21240
malus_domestica	MD00G1182600.v1.1 MD09G1180400.v1.1 MD12G1048900.v1.1 MD12G1049400.v1.1 MD14G1047800.v1.1 MD14G1048300.v1.1 MD17G1166400.v1.1
prunus_persica	Prupe.1G545600_v2.0.a1 Prupe.1G545600_v2.0.a1 Prupe.4G080900_v2.0.a1 Prupe.7G086800_v2.0.a1 Prupe.7G087500_v2.0.a1
pyrus_communis	pycom12g04430 pycom14g03940
rosa_chinensis	RchiOBHm_Chr1g0324101 RchiOBHm_Chr3g0477701 RchiOBHm_Chr6g0294091 RchiOBHm_Chr7g0181651
rosa_laevigata	RLG00000023697 RLG00000030219
rosa_multiflora	Rmu_sc0001227.1_g000040 Rmu_sc0001981.1_g000052 Rmu_sc0002404.1_g000001 Rmu_sc0002451.1_g000065 Rmu_sc0002503.1_g000014 Rmu_sc0006187.1_g000016 Rmu_sc0019065.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432590 Rroxscaffold_3G00271820 Rroxscaffold_4G00325850 Rroxscaffold_7G00173660
rosa_rugosa	Rorug04G0017100 Rorug05G0250800 Rorug06G0240900
rosa_samantha	Rh1AG060200 Rh1AG208100 Rh1BG051300 Rh3BG246700 Rh3CG240500 Rh6AG160700 Rh7AG045100 Rh7BG044200 Rh7CG045800 Rh7DG044700
rosa_wichuraiana	Rw1G005140 Rw3G019280 Rw6G030820 Rw7G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	2 cut(s)	9, 22
AfiI	CCNNNNNNNGG	1 cut(s)	25
AlwI	GGATC	2 cut(s)	9, 22
Ama87I	CYCGRG	2 cut(s)	18, 125
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	2 cut(s)	18, 125
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	14
BcgI	CGANNNNNNTGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	18, 125
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	16, 95
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	16, 95
BsiHKCI	CYCGRG	2 cut(s)	18, 125
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	18, 125
Bsp143I	GATC	2 cut(s)	14, 58
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	9, 22
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	16, 95
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	14, 58
BstDEI	CTNAG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	17, 61
BstMBI	GATC	2 cut(s)	14, 58
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	102
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	92
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	16, 60
DpnII	GATC	2 cut(s)	14, 58
Eco47I	GGWCC	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	18, 125
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	72, 77
FatI	CATG	1 cut(s)	75
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	2 cut(s)	31, 128
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	9, 63, 133
Hpy188III	TCNNGA	3 cut(s)	18, 53, 76
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	14, 58
LpnPI	CCDG	5 cut(s)	11, 20, 38, 80, 108
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	16, 60
MboI	GATC	2 cut(s)	14, 58
MflI	RGATCY	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	25, 137
MnlI	CCTC	6 cut(s)	14, 72, 93, 97, 138, 141
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	14, 58
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	75
PleI	GAGTC	2 cut(s)	25, 136
PpsI	GAGTC	2 cut(s)	25, 136
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	92
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	14, 58
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	25, 137
SetI	ASST	4 cut(s)	30, 39, 122, 152
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	154
TaqI	TCGA	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.