RchiOBHm_Chr1g0334501

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
26704533 .. 26705628
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGGAGTCGTCGGATCCACCACCGTCGATCAACTTCGGCACCGCAGAGGCTCTCGACCACATCCGTAGCCTCACCGACGTCGGAGCCATGACGCGCCTCCTCCACGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGACCACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCGGCTGGACGCGATTGTGGAGAGGACCAACTGCATTGACGGCGTTAAGCAGGCGCTTGACGGCCAGGACTACGAGTCTGCGGCGAAGTTCGTGCAGAGGTTTACGCAGATTGAGTCGGAGTATAGGGATTCGGGTTCGGAGCAGAGGGATCAGCTCATGGAGTCGAAGAAGCAGCTCGAATCGATTGTGAAGAAGAAGCTATCTGCAGCCGTGGACCAGAGGGACCATCCCAATGTGCTGAGGTTCATTAGGCTCTACACGCCGTTAGGGATAGAAGAGGAGGGTCTACAGGCGTATGTGAGTTACTTGAGGAAGGTGATTGGGATGAGATCGAGGCTCGAGTTCGAGCATTTGATGGAGTTGATGGAGCAGAAGAACAATCAGAACCAGCAGGTTAATTTTGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAAGAGAATGATGAGATTTTGAGGGGCTCTGTGGGGAAGATGGGATTGTTTATGCTATTTGTGAGCTTCAAGAGGAGTGTGATTCGAGGGGGACTTTGA

Protein Analysis

296

Amino Acids

33.48

Weight (kDa)

5.56

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG4_N PF20663 62 - 156 2.9e-28 Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m PF08318 196 - 280 1.2e-15 COG4 transport protein, middle alpha-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 2 cut(s) 275, 727
AccB1I GGYRCC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 631
AccII CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
AciI CCGC 3 cut(s) 42, 301, 425
AclWI GGATC 4 cut(s) 8, 21, 141, 501
AcoI YGGCCR 1 cut(s) 406
AcyI GRCGYC 2 cut(s) 78, 234
AfeI AGCGCT 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 2 cut(s) 794, 862
AhdI GACNNNNNGTC 1 cut(s) 418
AjiI CACGTC 2 cut(s) 244, 286
AjnI CCWGG 3 cut(s) 129, 207, 408
AluBI AGCT 5 cut(s) 307, 499, 520, 544, 858
AluI AGCT 5 cut(s) 307, 499, 520, 544, 858
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 4 cut(s) 8, 21, 141, 501
Ama87I CYCGRG 1 cut(s) 683
Aor51HI AGCGCT 1 cut(s) 164
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 517, 551
AspLEI GCGC 6 cut(s) 96, 128, 165, 293, 327, 400
AspS9I GGNCC 5 cut(s) 211, 298, 369, 559, 568
AsuHPI GGTGA 2 cut(s) 64, 673
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 5 cut(s) 211, 298, 369, 559, 568
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 2 cut(s) 309, 821
BauI CACGAG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 529, 563
BccI CCATC 4 cut(s) 579, 694, 703, 826
BceAI ACGGC 4 cut(s) 400, 421, 539, 592
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 3 cut(s) 131, 209, 410
BcoDI GTCTC 1 cut(s) 262
BfmI CTRYAG 2 cut(s) 549, 632
BfoI RGCGCY 3 cut(s) 166, 294, 401
BfuAI ACCTGC 2 cut(s) 275, 727
BisI GCNGC 3 cut(s) 426, 518, 552
BlsI GCNGC 3 cut(s) 427, 519, 553
Bme1390I CCNGG 3 cut(s) 131, 209, 410
Bme18I GGWCC 5 cut(s) 211, 298, 369, 559, 568
BmeRI GACNNNNNGTC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 683
BmgBI CACGTC 2 cut(s) 244, 286
BmgT120I GGNCC 5 cut(s) 211, 298, 369, 559, 568
BmiI GGNNCC 4 cut(s) 15, 40, 85, 569
BmrFI CCNGG 3 cut(s) 131, 209, 410
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 673
Bsa29I ATCGAT 1 cut(s) 527
BsaHI GRCGYC 2 cut(s) 78, 234
BsaJI CCNNGG 4 cut(s) 129, 207, 294, 555
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 233, 245, 263, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 319
BseBI CCWGG 3 cut(s) 131, 209, 410
BseCI ATCGAT 1 cut(s) 527
BseDI CCNNGG 4 cut(s) 129, 207, 294, 555
BseGI GGATG 3 cut(s) 60, 571, 675
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 6 cut(s) 89, 143, 250, 332, 638, 880
BseXI GCAGC 2 cut(s) 529, 563
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
BshFI GGCC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 309, 821
Bsp143I GATC 5 cut(s) 13, 27, 133, 493, 674
BspACI CCGC 3 cut(s) 42, 301, 425
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 576
BspDI ATCGAT 1 cut(s) 527
BspFNI CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
BspLI GGNNCC 4 cut(s) 15, 40, 85, 569
BspMAI CTGCAG 1 cut(s) 553
BspMI ACCTGC 2 cut(s) 275, 727
BspPI GGATC 4 cut(s) 8, 21, 141, 501
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 129, 207, 294, 555
BssMI GATC 5 cut(s) 13, 27, 133, 493, 674
BssNI GRCGYC 2 cut(s) 78, 234
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 3 cut(s) 131, 209, 410
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 615, 789
BstACI GRCGYC 2 cut(s) 78, 234
BstC8I GCNNGC 2 cut(s) 305, 396
BstDEI CTNAG 1 cut(s) 584
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 3 cut(s) 60, 571, 675
BstFNI CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
BstH2I RGCGCY 3 cut(s) 166, 294, 401
BstHHI GCGC 6 cut(s) 96, 128, 165, 293, 327, 400
BstKTI GATC 5 cut(s) 16, 30, 136, 496, 677
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 5 cut(s) 13, 27, 133, 493, 674
BstMWI GCNNNNNNNGC 3 cut(s) 346, 384, 604
BstNI CCWGG 3 cut(s) 131, 209, 410
BstSCI CCNGG 3 cut(s) 129, 207, 408
BstSFI CTRYAG 2 cut(s) 549, 632
BstUI CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
BstV1I GCAGC 2 cut(s) 529, 563
BstX2I RGATCY 2 cut(s) 13, 133
BstYI RGATCY 2 cut(s) 13, 133
Bsu15I ATCGAT 1 cut(s) 527
BsuRI GGCC 1 cut(s) 408
BsuTUI ATCGAT 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 555
BtrI CACGTC 2 cut(s) 244, 286
BtsCI GGATG 3 cut(s) 60, 571, 675
BveI ACCTGC 2 cut(s) 275, 727
Cac8I GCNNGC 2 cut(s) 305, 396
CfoI GCGC 6 cut(s) 96, 128, 165, 293, 327, 400
Cfr13I GGNCC 5 cut(s) 211, 298, 369, 559, 568
ClaI ATCGAT 1 cut(s) 527
CseI GACGC 4 cut(s) 100, 242, 316, 362
CviAII CATG 2 cut(s) 88, 502
DdeI CTNAG 1 cut(s) 584
DpnI GATC 5 cut(s) 15, 29, 135, 495, 676
DpnII GATC 5 cut(s) 13, 27, 133, 493, 674
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 615, 789
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 2 cut(s) 615, 789
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 309, 821
Eco47I GGWCC 5 cut(s) 211, 298, 369, 559, 568
Eco47III AGCGCT 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 3 cut(s) 129, 207, 408
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 309, 821
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 2 cut(s) 91, 505
FaiI YATR 6 cut(s) 89, 113, 468, 503, 642, 845
FaqI GGGAC 1 cut(s) 581
FatI CATG 2 cut(s) 87, 501
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 426, 518, 552
FokI GGATG 3 cut(s) 47, 558, 682
FriOI GRGCYC 2 cut(s) 309, 821
Fsp4HI GCNGC 3 cut(s) 426, 518, 552
GlaI GCGC 6 cut(s) 95, 127, 164, 292, 326, 399
GluI GCNGC 3 cut(s) 426, 518, 552
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 3 cut(s) 166, 294, 401
HaeIII GGCC 1 cut(s) 408
HapII CCGG 1 cut(s) 346
HgaI GACGC 4 cut(s) 100, 242, 316, 362
HhaI GCGC 6 cut(s) 96, 128, 165, 293, 327, 400
Hin1I GRCGYC 2 cut(s) 78, 234
Hin1II CATG 2 cut(s) 91, 505
Hin6I GCGC 6 cut(s) 94, 126, 163, 291, 325, 398
HinP1I GCGC 6 cut(s) 94, 126, 163, 291, 325, 398
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 7 cut(s) 5, 419, 458, 473, 506, 524, 874
HpaII CCGG 1 cut(s) 346
HphI GGTGA 2 cut(s) 64, 673
Hpy166II GTNNAC 4 cut(s) 331, 447, 559, 632
Hpy188I TCNGA 7 cut(s) 13, 83, 169, 232, 463, 484, 729
Hpy188III TCNNGA 3 cut(s) 53, 196, 862
Hpy8I GTNNAC 4 cut(s) 331, 447, 559, 632
Hpy99I CGWCG 5 cut(s) 13, 28, 80, 83, 236
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 4 cut(s) 78, 243, 255, 285
HpyCH4V TGCA 4 cut(s) 111, 378, 439, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 384, 604
HpyF3I CTNAG 1 cut(s) 584
HpySE526I ACGT 4 cut(s) 78, 243, 255, 285
Hsp92I GRCGYC 2 cut(s) 78, 234
Hsp92II CATG 2 cut(s) 91, 505
HspAI GCGC 6 cut(s) 94, 126, 163, 291, 325, 398
Kzo9I GATC 5 cut(s) 13, 27, 133, 493, 674
LmnI GCTCC 5 cut(s) 83, 170, 345, 484, 712
Lsp1109I GCAGC 2 cut(s) 529, 563
MaeII ACGT 4 cut(s) 78, 243, 255, 285
MaeIII GTNAC 1 cut(s) 647
MalI GATC 5 cut(s) 15, 29, 135, 495, 676
MboI GATC 5 cut(s) 13, 27, 133, 493, 674
MboII GAAGA 7 cut(s) 523, 547, 550, 632, 730, 806, 841
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 2 cut(s) 13, 133
MhlI GDGCHC 2 cut(s) 309, 821
MluCI AATT 3 cut(s) 742, 763, 789
MlyI GAGTC 4 cut(s) 14, 428, 467, 515
MmeI TCCRAC 5 cut(s) 61, 192, 255, 276, 441
MseI TTAA 3 cut(s) 390, 741, 771
MslI CAYNNNNRTG 1 cut(s) 576
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 3 cut(s) 131, 209, 410
MunI CAATTG 1 cut(s) 789
MvaI CCWGG 3 cut(s) 131, 209, 410
MvnI CGCG 6 cut(s) 94, 126, 303, 325, 327, 356
MwoI GCNNNNNNNGC 3 cut(s) 346, 384, 604
NdeII GATC 5 cut(s) 13, 27, 133, 493, 674
NlaIII CATG 2 cut(s) 91, 505
NlaIV GGNNCC 4 cut(s) 15, 40, 85, 569
PaeR7I CTCGAG 1 cut(s) 683
PaqCI CACCTGC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 240, 282
PfeI GAWTC 3 cut(s) 473, 524, 874
PflFI GACNNNGTC 3 cut(s) 221, 242, 284
PkrI GCNGC 3 cut(s) 427, 519, 553
PleI GAGTC 4 cut(s) 13, 427, 466, 514
PpsI GAGTC 4 cut(s) 13, 427, 466, 514
PpuMI RGGWCCY 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 129, 207, 408
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 3 cut(s) 129, 207, 408
PspN4I GGNNCC 4 cut(s) 15, 40, 85, 569
PspPI GGNCC 5 cut(s) 211, 298, 369, 559, 568
PspPPI RGGWCCY 1 cut(s) 211
PspXI VCTCGAGB 1 cut(s) 683
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 2 cut(s) 13, 133
PsyI GACNNNGTC 3 cut(s) 221, 242, 284
RseI CAYNNNNRTG 1 cut(s) 576
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 3 cut(s) 390, 741, 771
SatI GCNGC 3 cut(s) 426, 518, 552
Sau3AI GATC 5 cut(s) 13, 27, 133, 493, 674
Sau96I GGNCC 5 cut(s) 211, 298, 369, 559, 568
SchI GAGTC 4 cut(s) 14, 428, 467, 515
ScrFI CCNGG 3 cut(s) 131, 209, 410
SduI GDGCHC 2 cut(s) 309, 821
SfcI CTRYAG 2 cut(s) 549, 632
Sfr274I CTCGAG 1 cut(s) 683
SinI GGWCC 5 cut(s) 211, 298, 369, 559, 568
SlaI CTCGAG 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 2 cut(s) 652, 683
SmoI CTYRAG 2 cut(s) 652, 683
Sse9I AATT 3 cut(s) 742, 763, 789
SsiI CCGC 3 cut(s) 42, 301, 425
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 129, 207, 408
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 4 cut(s) 81, 246, 258, 288
TasI AATT 3 cut(s) 742, 763, 789
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 3 cut(s) 473, 524, 874
Tru1I TTAA 3 cut(s) 390, 741, 771
Tru9I TTAA 3 cut(s) 390, 741, 771
TseI GCWGC 2 cut(s) 517, 551
TspDTI ATGAA 1 cut(s) 580
TspGWI ACGGA 1 cut(s) 53
Tth111I GACNNNGTC 3 cut(s) 221, 242, 284
VpaK11BI GGWCC 5 cut(s) 211, 298, 369, 559, 568
XhoI CTCGAG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 631
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.