RchiOBHm_Chr1g0358101

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50207778 .. 50208911
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGAGTGGCACAGATCAAGCGTTTAGTTCTAGTTCTCGGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACACCTATAGATTCAATGCAAGAGTCGCCTTCCGACCAGCATCTAAAATCCAGAAAGAGGCTGAGTGGAAAGCCTGGTGAGCTGTTAAGGGATGGCTATGTTGTAGCTCTATATGCAAGACATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAATGAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCATTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTAACCCTCCAATGATGCCTCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

251

Amino Acids

27.83

Weight (kDa)

9.73

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 439, 508
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 3 cut(s) 470, 549, 675
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 2 cut(s) 380, 574
AcuI CTGAAG 2 cut(s) 72, 590
AfiI CCNNNNNNNGG 2 cut(s) 129, 436
AgsI TTSAA 2 cut(s) 87, 694
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AluBI AGCT 6 cut(s) 154, 179, 287, 568, 619, 743
AluI AGCT 6 cut(s) 154, 179, 287, 568, 619, 743
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 272
AoxI GGCC 2 cut(s) 455, 717
ApeKI GCWGC 3 cut(s) 284, 341, 743
ApoI RAATTY 2 cut(s) 380, 574
AspS9I GGNCC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 513
BanI GGYRCC 2 cut(s) 439, 508
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BauI CACGAG 1 cut(s) 529
BbsI GAAGAC 2 cut(s) 60, 197
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 296, 328, 730
BccI CCATC 2 cut(s) 158, 638
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 2 cut(s) 562, 636
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 2 cut(s) 30, 248
BfmI CTRYAG 2 cut(s) 78, 282
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 4 cut(s) 285, 342, 470, 744
BlsI GCNGC 4 cut(s) 286, 343, 471, 745
Bme1390I CCNGG 2 cut(s) 147, 201
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 3 cut(s) 245, 441, 510
BmrFI CCNGG 2 cut(s) 147, 201
BmsI GCATC 4 cut(s) 121, 477, 615, 652
BpiI GAAGAC 2 cut(s) 60, 197
BpuEI CTTGAG 2 cut(s) 43, 641
BpuMI CCSGG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 199, 452
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 436
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 635
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 199, 452
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 129, 436
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 125, 302, 675
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 3 cut(s) 296, 328, 730
BshFI GGCC 2 cut(s) 457, 719
BshNI GGYRCC 2 cut(s) 439, 508
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 2 cut(s) 201, 524
BslI CCNNNNNNNGG 2 cut(s) 129, 436
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 2 cut(s) 457, 719
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 513, 536
Bsp143I GATC 5 cut(s) 13, 277, 332, 562, 636
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 3 cut(s) 470, 549, 675
BspANI GGCC 2 cut(s) 457, 719
BspCNI CTCAG 3 cut(s) 126, 301, 676
BspLI GGNNCC 3 cut(s) 245, 441, 510
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 439, 508
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 199, 452
BssMI GATC 5 cut(s) 13, 277, 332, 562, 636
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 134, 288, 684
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 5 cut(s) 16, 280, 335, 565, 639
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 5 cut(s) 13, 277, 332, 562, 636
BstMWI GCNNNNNNNGC 6 cut(s) 97, 151, 185, 565, 616, 625
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 199
BstSFI CTRYAG 2 cut(s) 78, 282
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 3 cut(s) 296, 328, 730
BstV2I GAAGAC 2 cut(s) 60, 197
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 457, 719
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 741
Cfr13I GGNCC 1 cut(s) 718
CviAII CATG 4 cut(s) 209, 256, 412, 453
DdeI CTNAG 3 cut(s) 134, 288, 684
DpnI GATC 5 cut(s) 15, 279, 334, 564, 638
DpnII GATC 5 cut(s) 13, 277, 332, 562, 636
Eco130I CCWWGG 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 539
Eco57I CTGAAG 2 cut(s) 72, 590
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 4 cut(s) 212, 259, 415, 456
FatI CATG 4 cut(s) 208, 255, 411, 452
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 2 cut(s) 562, 636
Fnu4HI GCNGC 4 cut(s) 285, 342, 470, 744
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 285, 342, 470, 744
FspBI CTAG 2 cut(s) 30, 248
GluI GCNGC 4 cut(s) 285, 342, 470, 744
HaeIII GGCC 2 cut(s) 457, 719
HapII CCGG 2 cut(s) 201, 524
Hin1II CATG 4 cut(s) 212, 259, 415, 456
HinfI GANTC 4 cut(s) 56, 83, 95, 415
HpaII CCGG 2 cut(s) 201, 524
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 5 cut(s) 106, 308, 641, 658, 685
Hpy188III TCNNGA 3 cut(s) 60, 123, 529
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 9 cut(s) 91, 188, 284, 361, 580, 599, 610, 730, 746
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 151, 185, 565, 616, 625
HpyF3I CTNAG 3 cut(s) 134, 288, 684
Hsp92II CATG 4 cut(s) 212, 259, 415, 456
Ksp22I TGATCA 2 cut(s) 562, 636
Kzo9I GATC 5 cut(s) 13, 277, 332, 562, 636
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 296, 328, 730
LweI GCATC 4 cut(s) 121, 477, 615, 652
MaeI CTAG 2 cut(s) 30, 248
MaeIII GTNAC 1 cut(s) 526
MalI GATC 5 cut(s) 15, 279, 334, 564, 638
MboI GATC 5 cut(s) 13, 277, 332, 562, 636
MboII GAAGA 5 cut(s) 65, 197, 384, 583, 715
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 513, 536
MluCI AATT 2 cut(s) 380, 574
MlyI GAGTC 2 cut(s) 50, 104
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 123, 305, 453, 459, 468, 489, 501, 531, 709
MseI TTAA 3 cut(s) 158, 228, 754
MslI CAYNNNNRTG 1 cut(s) 451
MspA1I CMGCKG 2 cut(s) 568, 675
MspI CCGG 2 cut(s) 201, 524
MspR9I CCNGG 2 cut(s) 147, 201
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 97, 151, 185, 565, 616, 625
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 452
NdeII GATC 5 cut(s) 13, 277, 332, 562, 636
NlaIII CATG 4 cut(s) 212, 259, 415, 456
NlaIV GGNNCC 3 cut(s) 245, 441, 510
NmuCI GTSAC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 83, 415
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 4 cut(s) 286, 343, 471, 745
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 245, 441, 510
PspPI GGNCC 1 cut(s) 718
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 3 cut(s) 158, 228, 754
SatI GCNGC 4 cut(s) 285, 342, 470, 744
Sau3AI GATC 5 cut(s) 13, 277, 332, 562, 636
Sau96I GGNCC 1 cut(s) 718
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 2 cut(s) 147, 201
SduI GDGCHC 2 cut(s) 513, 536
SfaNI GCATC 4 cut(s) 121, 477, 615, 652
SfcI CTRYAG 2 cut(s) 78, 282
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 58, 620
SmoI CTYRAG 2 cut(s) 58, 620
Sse9I AATT 2 cut(s) 380, 574
SsiI CCGC 3 cut(s) 470, 549, 675
SspMI CTAG 2 cut(s) 30, 248
StyD4I CCNGG 2 cut(s) 145, 199
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 460
TasI AATT 2 cut(s) 380, 574
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 2 cut(s) 83, 415
Tru1I TTAA 3 cut(s) 158, 228, 754
Tru9I TTAA 3 cut(s) 158, 228, 754
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 3 cut(s) 284, 341, 743
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 197, 284, 428
TspRI CASTG 1 cut(s) 741
Van91I CCANNNNNTGG 1 cut(s) 436
XapI RAATTY 2 cut(s) 380, 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XspI CTAG 2 cut(s) 30, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.