Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

53444863 .. 53445882

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTGAAGCATCCAGAGATCAATGTGCAGAATCTGCATGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCACCTGGATGCACCATTACTGGTACCTCATCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCATCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

71

Amino Acids

8.54

Weight (kDa)

9.35

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	2 - 66	1.2e-29	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	96, 166
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	49, 60
AluI	AGCT	2 cut(s)	49, 60
Alw26I	GTCTC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BccI	CCATC	2 cut(s)	122, 172
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	19, 42, 90
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	163, 173
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 166
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	10, 105
BseLI	CCNNNNNNNGG	2 cut(s)	96, 166
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	96, 166
BsmAI	GTCTC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	97
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	198, 207, 211
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	10, 105
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 202, 206
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	10, 105
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	198, 207, 211
CaiI	CAGNNNCTG	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	5 cut(s)	49, 60, 200, 205, 213
CviKI_1	RGCY	5 cut(s)	49, 60, 200, 205, 213
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 78
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	214
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	14, 142, 190
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	28, 37, 55, 103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 202, 206
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	7 cut(s)	27, 82, 97, 109, 173, 182, 195
LweI	GCATC	3 cut(s)	19, 42, 90
MaeI	CTAG	1 cut(s)	214
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	75, 128, 138, 164
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	34, 202, 206
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	7 cut(s)	51, 62, 92, 98, 120, 156, 162
SfaNI	GCATC	3 cut(s)	19, 42, 90
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	142, 188
SmoI	CTYRAG	2 cut(s)	142, 188
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.