Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

54739331 .. 54742666

Gene Structure 3336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGTCCAGATCTCAAACCTCTTTCTCTGAATCGCAAGTCGTTTCGGACATAGAGTCACCATGGCGGCAAAGTAATGACCTAGATCAGATAGATCCCGCTAAACCCATATTGAATGTGGCACCGTTGAATAGCCTGCCATATATTCTCCCAACCACAAAGCCATCAGCAGCCAGAAAGTCCAGTGAACAAGAAAAAGTGAAGCCAGCTATGGTGCTTTTACCTTTACTCGCAACAAGAGAAGAGCGAGATAAGATTTTGGAAACCACCAAAGGGGTTGTATTGACTGGAGTTACTGCAACGGGACAGGTGGGACCCATAATTGTAACGGAACCCACAGACCTCTCTGTTTCCACACAAGCTTCAGCTGGTTCATCTCTCCCTCCATCAATTGAGGCTACAGCGTTTGTTGGAGATATACCGCTGGACATCCCAGCTGTGGCAGTGAATTTGGCTGGTATCAATGAGTCTGCACATGATGTAGACCCGCATATCGGTCCTCCAGTAGTGGAAGCACTGTCAAGGACAAAATTCATAGGGCTTTCCGAGGGTTTTAGCTTACTAAATGGGTTGCCACATTCATTAACTTTTCAGATTGTTAATGTGATTGGTACTGGGGAGAATGTGATGGGGTATTGGACACCTGAAAATGAATTTGTGAGAAACTTGAATTCCAAAACCGCAATGAACAGCTCATTCTCTACTTCCAATAGTAGTCTTGGGTATATTATATGGCCTGGAGACTCCACCTCTACTCCAAAAGGTTGGCAGATTCCTACAAGTGGGACGAAGTTGAAGATTTTACTACCAGTTCAGAGTGGGTTCAAGGAATTTACGAACGTGGCGGATGATTCTAACCTTGAGCAGCAGATTATCATGAAAGAGGAATTTTGCAATGAACAGTTGGCTCTGGTCTATCGATTTTGTAGGTCAGGTCATTTTGATAAGGCAAAAGAGGTGTTGGTGCAAATATTAGAGAGGTGGAAATCAAAAGTTATGGCTAAAATTGCAGGGGAGGAGAATACTAAGAAACCAAATTTTGTTCTTAAGGAATGCCTCAAGCTCGACAATAAGATGGCGGTCTGCTCCATTGACACCCAATCTCGATCGCATCTATTGTCGTGGTTCATTCTTTTCTTTGAATTGGGTAATTGTGAGACATCGAAGGAAACACCACCCTATTGCAGAAAAGCATCGGCTGAAATTAGTCTAGTGACCCAAAGCTTAGTCTCTCAGGTATTCACTGCCATCATTTCTAGTCCTCAATACTTTCGAGCATCTTTTTATGGGGTATTGTATGACTTGATTAAGCTCTATGCTGTGATTTATATTGCTTTCATCGATAATGCTGGAATTTTGCTCCCTGATGACTCATTTGGGATAATGATAAGAAATGGCAAGTTATTTTATGAATATATGAATGTGCTTGCCAAAATGCTTTTAAGGGGTGTTAGTAAGGAGCGGCTGATGAGTTCAAATGTTAGTATAATGGATACAATTGTTGCTGCATTATGTGGAGAGAGCATCACGATGGATGGCATTGGAAACTCATTTTTGATTTGGTTGCTTGCAATTCATAGTACAAAGTTTAAGAGAGAAGCTGCAAGTATATTACATATCTGGGCATATCATATTAATGATCAAATGGTGGACTGGAATGTTGTACATGCCTTGATGTATGAAGAGGGATTCATGATTGAGTTTGTTGAGAAACCAAAAGACAGGAAATTTGAAGCTTTGATAGATGGTGCTACCAATTTGGGAATTGATGACCTGAACACCCAAGAGACACCTTACCTTACCACTGTGGATATTTATGTTCTTTACAGGAAAGTGATGTCTGATATGCTTCAAGTAAAGTTTTCAGATTTTGGCACTGCAGTTGTTCAGGGTGCAACCTACATAAGCCTGAAAGTTAAAGTTTACATGGTTGTTGGCTATTGTAAAGAAATTGTTCACACTTGGTTGTCAAAATTTCCAGCAGTTCAATTTTGCAGTTTAAGCGATGATGCATTTGGAGATATTGCTGGTATGGAATCTGATCTTTTCAGTTCATATGCTGAATCATTTTGTGCTGCTCTAGTTGTTGCTTCCATTTCCTCATTTGTAATCCACCATGAGTTCACCACCATGCTGTACCCCCTCCTTGTTAGTTCTATGGGCATAAATGATGTTTGGTCGCAATATGTTGATGGCGCCATAGTGACTACAGCACATCTGGAATCAATCTCTGAGAGCCAAGGGAATGGAGTCGTAATTGAGAAAATGGAGAGCTCCAATCTCCTATTTAAGGAACTGGATGTTACTGACAGGAACATAATTACTCATCTTTCAAAAGACTCTGAGCTCCCACGCAAAGTTGAAGACACGGATTGTTATTGGAAATGGTTTGCTAGTAACTTGGCCTCAGGAGGTGCTTCTTCTCTTCTCTTTGTCTACTCCTTGTACTATGCTTGTACCCATCTGGCTCGTGATTCTAAGGCTACAAAGAAGGGAGGAGAACGACAATTCAATGGTCTGGTTGATGTCTATAGGAAGACATTGAAATCTGATGGTATTGCAGGTCTATATCATGGATCCATTATATCATGTGTTGAAGCAATTATGGTGATTAAAGCAATGCCAGAGAGAAGACTGGTTTCTCCTGAAGTCCTAGGGGTTCACTTTCTTTTTCTTACATGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

894

Amino Acids

99.04

Weight (kDa)

5.39

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	669 - 723	5.9e-07	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2549
AccB1I	GGYRCC	2 cut(s)	118, 2192
AccBSI	CCGCTC	1 cut(s)	1459
AccI	GTMKAC	2 cut(s)	480, 2433
AciI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
AclWI	GGATC	3 cut(s)	86, 2568, 2581
AcuI	CTGAAG	2 cut(s)	345, 2664
AcyI	GRCGYC	1 cut(s)	2193
AfaI	GTAC	6 cut(s)	610, 1579, 1662, 2135, 2444, 2455
AfiI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	1 cut(s)	2675
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	733
Alw21I	GWGCWC	2 cut(s)	2273, 2346
Alw26I	GTCTC	4 cut(s)	732, 1148, 1231, 1778
AlwI	GGATC	3 cut(s)	86, 2568, 2581
AoxI	GGCC	2 cut(s)	731, 2400
ApeKI	GCWGC	5 cut(s)	167, 862, 1502, 1598, 2072
ArsI	GACNNNNNNTTYG	2 cut(s)	1709, 1741
AseI	ATTAAT	1 cut(s)	1632
Asp700I	GAANNNNTTC	1 cut(s)	1950
AspA2I	CCTAGG	1 cut(s)	2650
AspLEI	GCGC	1 cut(s)	2195
AspS9I	GGNCC	2 cut(s)	311, 494
AsuHPI	GGTGA	3 cut(s)	48, 2113, 2617
AvaII	GGWCC	2 cut(s)	311, 494
AvrII	CCTAGG	1 cut(s)	2650
AxyI	CCTNAGG	1 cut(s)	2404
BaeI	ACNNNNGTAYC	2 cut(s)	1482, 1515
BamHI	GGATCC	1 cut(s)	2573
BanI	GGYRCC	2 cut(s)	118, 2192
BanII	GRGCYC	2 cut(s)	2273, 2346
BauI	CACGAG	1 cut(s)	2466
BbsI	GAAGAC	3 cut(s)	2367, 2540, 2635
Bbv12I	GWGCWC	2 cut(s)	2273, 2346
BbvI	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	1483
BclI	TGATCA	1 cut(s)	1636
BcoDI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BfaI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
BfmI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
BfoI	RGCGCY	1 cut(s)	2196
BfrI	CTTAAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	2549
BfuI	GTATCC	1 cut(s)	1483
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
BlnI	CCTAGG	1 cut(s)	2650
BlsI	GCNGC	7 cut(s)	66, 169, 864, 1461, 1504, 1600, 2074
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	2 cut(s)	311, 494
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	311, 494
BmiI	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	3 cut(s)	2367, 2540, 2635
BpmI	CTGGAG	3 cut(s)	306, 483, 756
BpuEI	CTTGAG	2 cut(s)	878, 1040
Bsa29I	ATCGAT	2 cut(s)	916, 1338
BsaHI	GRCGYC	1 cut(s)	2193
BsaJI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
Bse1I	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
Bse21I	CCTNAGG	1 cut(s)	2404
Bse3DI	GCAATG	3 cut(s)	687, 898, 2622
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	2 cut(s)	916, 1338
BseDI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BseGI	GGATG	4 cut(s)	426, 850, 1537, 2302
BseLI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
BseMI	GCAATG	3 cut(s)	687, 898, 2622
BseMII	CTCAG	4 cut(s)	1244, 2220, 2331, 2418
BseNI	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
BseRI	GAGGAG	2 cut(s)	1028, 2508
BseXI	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	1106
BshFI	GGCC	2 cut(s)	733, 2402
BshNI	GGYRCC	2 cut(s)	118, 2192
BshVI	ATCGAT	2 cut(s)	916, 1338
BsiEI	CGRYCG	1 cut(s)	1106
BsiHKAI	GWGCWC	2 cut(s)	2273, 2346
BslFI	GGGAC	3 cut(s)	315, 324, 796
BslI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
BsmAI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BsmFI	GGGAC	3 cut(s)	315, 324, 796
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	2 cut(s)	733, 2402
Bsp1286I	GDGCHC	2 cut(s)	2273, 2346
Bsp1407I	TGTACA	1 cut(s)	1660
Bsp143I	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
BspANI	GGCC	2 cut(s)	733, 2402
BspCNI	CTCAG	4 cut(s)	1243, 2221, 2332, 2417
BspDI	ATCGAT	2 cut(s)	916, 1338
BspHI	TCATGA	2 cut(s)	873, 1689
BspLI	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
BspMAI	CTGCAG	1 cut(s)	1879
BspMI	ACCTGC	1 cut(s)	2549
BspPI	GGATC	3 cut(s)	86, 2568, 2581
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	2 cut(s)	118, 2192
BspTI	CTTAAG	1 cut(s)	1043
BsrBI	CCGCTC	1 cut(s)	1459
BsrDI	GCAATG	3 cut(s)	687, 898, 2622
BsrGI	TGTACA	1 cut(s)	1660
BsrI	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
BssECI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BssMI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
BssNI	GRCGYC	1 cut(s)	2193
BssSI	CACGAG	1 cut(s)	2466
BssT1I	CCWWGG	3 cut(s)	59, 2236, 2650
Bst2BI	CACGAG	1 cut(s)	2466
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	123, 516, 900, 1804
Bst6I	CTCTTC	3 cut(s)	234, 1674, 2427
BstACI	GRCGYC	1 cut(s)	2193
BstAFI	CTTAAG	1 cut(s)	1043
BstAUI	TGTACA	1 cut(s)	1660
BstC8I	GCNNGC	4 cut(s)	134, 204, 1425, 1566
BstDEI	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	2285
BstF5I	GGATG	4 cut(s)	426, 850, 1537, 2302
BstH2I	RGCGCY	1 cut(s)	2196
BstHHI	GCGC	1 cut(s)	2195
BstKTI	GATC	7 cut(s)	11, 85, 94, 1106, 1639, 2041, 2576
BstMAI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BstMBI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
BstMCI	CGRYCG	1 cut(s)	1106
BstMWI	GCNNNNNNNGC	2 cut(s)	1004, 1998
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	2 cut(s)	1667, 2679
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
BstV1I	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BstV2I	GAAGAC	3 cut(s)	2367, 2540, 2635
BstX2I	RGATCY	3 cut(s)	8, 91, 2573
BstXI	CCANNNNNNTGG	2 cut(s)	762, 2243
BstYI	RGATCY	3 cut(s)	8, 91, 2573
Bsu15I	ATCGAT	2 cut(s)	916, 1338
Bsu36I	CCTNAGG	1 cut(s)	2404
BsuI	GTATCC	1 cut(s)	1483
BsuRI	GGCC	2 cut(s)	733, 2402
BsuTUI	ATCGAT	2 cut(s)	916, 1338
BtgI	CCRYGG	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	2016
BtsCI	GGATG	4 cut(s)	426, 850, 1537, 2302
BtsI	GCAGTG	3 cut(s)	447, 1239, 1872
BtsIMutI	CAGTG	6 cut(s)	187, 447, 512, 1239, 1800, 1872
BveI	ACCTGC	1 cut(s)	2549
Cac8I	GCNNGC	4 cut(s)	134, 204, 1425, 1566
CciI	TCATGA	2 cut(s)	873, 1689
CfoI	GCGC	1 cut(s)	2195
Cfr13I	GGNCC	2 cut(s)	311, 494
ClaI	ATCGAT	2 cut(s)	916, 1338
Csp6I	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
CviQI	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
DdeI	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
DinI	GGCGCC	1 cut(s)	2194
DpnI	GATC	7 cut(s)	10, 84, 93, 1105, 1638, 2040, 2575
DpnII	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	234, 1674, 2427
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	3 cut(s)	234, 1674, 2427
EciI	GGCGGA	1 cut(s)	857
Ecl136II	GAGCTC	2 cut(s)	2271, 2344
Eco130I	CCWWGG	3 cut(s)	59, 2236, 2650
Eco24I	GRGCYC	2 cut(s)	2273, 2346
Eco47I	GGWCC	2 cut(s)	311, 494
Eco53kI	GAGCTC	2 cut(s)	2271, 2344
Eco57I	CTGAAG	2 cut(s)	345, 2664
Eco81I	CCTNAGG	1 cut(s)	2404
EcoICRI	GAGCTC	2 cut(s)	2271, 2344
EcoNI	CCTNNNNNAGG	1 cut(s)	2285
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	3 cut(s)	59, 2236, 2650
EcoT22I	ATGCAT	1 cut(s)	2011
EcoT38I	GRGCYC	2 cut(s)	2273, 2346
EgeI	GGCGCC	1 cut(s)	2194
EheI	GGCGCC	1 cut(s)	2194
ErhI	CCWWGG	3 cut(s)	59, 2236, 2650
FaqI	GGGAC	3 cut(s)	315, 324, 796
FauI	CCCGC	2 cut(s)	103, 492
FauNDI	CATATG	1 cut(s)	2053
FbaI	TGATCA	1 cut(s)	1636
FblI	GTMKAC	2 cut(s)	480, 2433
Fnu4HI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
FokI	GGATG	4 cut(s)	413, 857, 1544, 2309
FriOI	GRGCYC	2 cut(s)	2273, 2346
Fsp4HI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
FspBI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
GlaI	GCGC	1 cut(s)	2194
GluI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	3 cut(s)	306, 483, 756
HaeII	RGCGCY	1 cut(s)	2196
HaeIII	GGCC	2 cut(s)	733, 2402
HhaI	GCGC	1 cut(s)	2195
Hin1I	GRCGYC	1 cut(s)	2193
Hin6I	GCGC	1 cut(s)	2193
HinP1I	GCGC	1 cut(s)	2193
HindIII	AAGCTT	3 cut(s)	357, 1219, 1731
HphI	GGTGA	3 cut(s)	48, 2113, 2617
Hpy166II	GTNNAC	8 cut(s)	185, 481, 1648, 1921, 1954, 2121, 2434, 2659
Hpy188III	TCNNGA	9 cut(s)	6, 874, 1101, 1525, 1690, 2216, 2406, 2468, 2642
Hpy8I	GTNNAC	8 cut(s)	185, 481, 1648, 1921, 1954, 2121, 2434, 2659
HpyAV	CCTTC	2 cut(s)	1156, 2482
HpyCH4III	ACNGT	4 cut(s)	123, 516, 900, 1804
HpyCH4IV	ACGT	1 cut(s)	837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1004, 1998
HpyF3I	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	2193
HspAI	GCGC	1 cut(s)	2193
KasI	GGCGCC	1 cut(s)	2192
KflI	GGGWCCC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	1636
Kzo9I	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	5 cut(s)	1088, 1362, 1456, 2276, 2349
Lsp1109I	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
LweI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
MaeI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	7 cut(s)	54, 289, 322, 1210, 2200, 2299, 2393
MalI	GATC	7 cut(s)	10, 84, 93, 1105, 1638, 2040, 2575
MbiI	CCGCTC	1 cut(s)	1459
MboI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
MboII	GAAGA	8 cut(s)	251, 805, 1691, 2372, 2409, 2414, 2545, 2640
MfeI	CAATTG	2 cut(s)	387, 1494
MflI	RGATCY	3 cut(s)	8, 91, 2573
MhlI	GDGCHC	2 cut(s)	2273, 2346
Mly113I	GGCGCC	1 cut(s)	2193
MlyI	GAGTC	6 cut(s)	62, 473, 734, 1361, 2256, 2330
MmeI	TCCRAC	1 cut(s)	388
Mph1103I	ATGCAT	1 cut(s)	2011
MroXI	GAANNNNTTC	1 cut(s)	1950
MslI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
MspA1I	CMGCKG	3 cut(s)	365, 421, 434
MspCI	CTTAAG	1 cut(s)	1043
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	2 cut(s)	387, 1494
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	2 cut(s)	1004, 1998
NarI	GGCGCC	1 cut(s)	2193
NcoI	CCATGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	2053
NdeII	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
NlaIV	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
NmuCI	GTSAC	3 cut(s)	54, 1210, 2200
NsiI	ATGCAT	1 cut(s)	2011
NspI	RCATGY	2 cut(s)	1667, 2679
PagI	TCATGA	2 cut(s)	873, 1689
PciI	ACATGT	1 cut(s)	2675
PciSI	GCTCTTC	1 cut(s)	234
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	1 cut(s)	1950
PfeI	GAWTC	8 cut(s)	29, 769, 848, 1686, 2033, 2060, 2219, 2471
PkrI	GCNGC	7 cut(s)	66, 169, 864, 1461, 1504, 1600, 2074
Ple19I	CGATCG	1 cut(s)	1106
PleI	GAGTC	6 cut(s)	61, 472, 734, 1361, 2255, 2330
PluTI	GGCGCC	1 cut(s)	2196
PpsI	GAGTC	6 cut(s)	61, 472, 734, 1361, 2255, 2330
PpuMI	RGGWCCY	1 cut(s)	311
PscI	ACATGT	1 cut(s)	2675
PshBI	ATTAAT	1 cut(s)	1632
Psp124BI	GAGCTC	2 cut(s)	2273, 2346
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
PspPI	GGNCC	2 cut(s)	311, 494
PspPPI	RGGWCCY	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	1879
PsuI	RGATCY	3 cut(s)	8, 91, 2573
PvuI	CGATCG	1 cut(s)	1106
PvuII	CAGCTG	2 cut(s)	365, 434
RsaI	GTAC	6 cut(s)	610, 1579, 1662, 2135, 2444, 2455
RsaNI	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
RseI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
SacI	GAGCTC	2 cut(s)	2273, 2346
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
Sau3AI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
Sau96I	GGNCC	2 cut(s)	311, 494
SchI	GAGTC	6 cut(s)	62, 473, 734, 1361, 2256, 2330
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	2 cut(s)	2273, 2346
SfaNI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
SfcI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
SfoI	GGCGCC	1 cut(s)	2194
SinI	GGWCC	2 cut(s)	311, 494
SmiMI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
SmlI	CTYRAG	3 cut(s)	857, 1043, 1055
SmoI	CTYRAG	3 cut(s)	857, 1043, 1055
SsiI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
SspDI	GGCGCC	1 cut(s)	2192
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
SstI	GAGCTC	2 cut(s)	2273, 2346
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	3 cut(s)	59, 2236, 2650
TaaI	ACNGT	4 cut(s)	123, 516, 900, 1804
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	6 cut(s)	916, 1062, 1102, 1160, 1270, 1338
TaqII	GACCGA	1 cut(s)	482
TatI	WGTACW	3 cut(s)	1577, 1660, 2442
TauI	GCSGC	2 cut(s)	67, 1462
TfiI	GAWTC	8 cut(s)	29, 769, 848, 1686, 2033, 2060, 2219, 2471
TscAI	CASTG	6 cut(s)	187, 447, 519, 1246, 1807, 1879
TseFI	GTSAC	3 cut(s)	54, 1210, 2200
TseI	GCWGC	5 cut(s)	167, 862, 1502, 1598, 2072
Tsp45I	GTSAC	3 cut(s)	54, 1210, 2200
TspGWI	ACGGA	2 cut(s)	341, 2381
TspRI	CASTG	6 cut(s)	187, 447, 519, 1246, 1807, 1879
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	2 cut(s)	311, 494
VspI	ATTAAT	1 cut(s)	1632
XagI	CCTNNNNNAGG	1 cut(s)	2285
XceI	RCATGY	2 cut(s)	1667, 2679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	2650
XmiI	GTMKAC	2 cut(s)	480, 2433
XmnI	GAANNNNTTC	1 cut(s)	1950
XspI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
Zsp2I	ATGCAT	1 cut(s)	2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.