Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001786

Physical Location & Seq

Genomic Coordinates Forward (+)

60186852 .. 60190055

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTGGACAAAGTCTCGGAGTTTAGTCAAGATCAAGAAGAAAGGTTTTTGTACTATGTATCTGTTGCAGAGGAGTTGGCGCAAGAGTTGAGTTCTTCAAATGGGAAATTGAAATCACTTATCGATGACTTAAGAAATGAAGTGGATTCTATCAGGACTTTCAGGAATGAACATTCTACGGAATACCAGAAGCTTCTGATGGAAGAGGAGCAGATGGCAGAAGAATTGAAGCTGTGTCTGGAAATTGGAAAGGACAGGTTCCAATCACAAGCTTATGATCCAACTTTTGTTGGGTCAATCAAAGAAGAGCAATGTACCGACTTTCAGAGATCTGCCTTAAATGAAAAGTGCACCGAGTGGCAGGAGCTTCTAAGGGAAGAGAAGGAGAAGGCAGAGAAGTTAATGCTACTTTTGGAAATTGAAAAGGAGAGAACACAGGCTGATGAACTGGCTTCTATTAGATCCATCTTTGATGAAAAATGCGTCGAGTACCAGAAGCTTCTAATGGATGAAAGGCAGAAGGTAGAGGATTCAATGCGACTATTGAAAATGCAAAAGGTGATAACGCAATCACAAGCTAATCAACTGGTTTTCAGATCTGCCACAGATGAATTTTTGAGGAAAGAAAACCAGGCTTCTAAAAAACTTTTGGAAGTTTTAAAGGCAGAATTGAAGGATGTGAAGAACAGAGAACTGTGTACTTGTGGTCAAGTCTCAGGAGCAACAAACAAACGCAAAAGAGAGAAGAACGAGAAAGAGGAGGAAGCTAACAATGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

30.59

Weight (kDa)

4.9

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58430 AT2G24560 AT2G24560 AT2G30220 AT2G30310 AT2G31540 AT2G31550
fragaria_vesca	FvH4_3g39810 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860 FvH4_7g24860
malus_domestica	MD03G1056900.v1.1 MD11G1058600.v1.1
prunus_persica	Prupe.6G047900_v2.0.a1
pyrus_communis	pycom12g09990
rosa_chinensis	RchiOBHm_Chr1g0347201 RchiOBHm_Chr1g0370741 RchiOBHm_Chr5g0071691
rosa_laevigata	RLG00000027014 RLG00000036240
rosa_multiflora	Rmu_co7970762.1_g000001 Rmu_sc0004550.1_g000015 Rmu_sc0009615.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009480 Rroxscaffold_4G00286280
rosa_rugosa	Rorug01G0358800 Rorug01G0358900.1 Rorug01G0359000 Rorug01G0359100 Rorug01G0359200 Rorug05G0414200
rosa_samantha	Rh1AG203000 Rh1BG066100 Rh1BG332000 Rh1CG188200 Rh1CG345900 Rh1DG363400 Rh5AG470300 Rh5BG099600 Rh5BG489800 Rh5CG397700 Rh5CG513600 Rh5DG500600
rosa_wichuraiana	Rw1G032430 Rw5G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	272, 456
AcsI	RAATTY	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	357
AfaI	GTAC	4 cut(s)	53, 316, 491, 700
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	7 cut(s)	99, 112, 229, 422, 534, 547, 673
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	7 cut(s)	193, 232, 272, 367, 499, 578, 767
AluI	AGCT	7 cut(s)	193, 232, 272, 367, 499, 578, 767
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	19, 718
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	272, 456
ApaLI	GTGCAC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	3 cut(s)	193, 208, 473
BciT130I	CCWGG	1 cut(s)	632
BcoDI	GTCTC	2 cut(s)	19, 718
BfrI	CTTAAG	1 cut(s)	130
BglII	AGATCT	2 cut(s)	329, 596
Bme1390I	CCNGG	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	453, 591
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	632
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	2 cut(s)	514, 682
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	2 cut(s)	453, 591
BseRI	GAGGAG	3 cut(s)	86, 221, 773
BseSI	GKGCMC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	19, 718
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	31, 277, 329, 461, 596
BspCNI	CTCAG	1 cut(s)	728
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	272, 456
BspQI	GCTCTTC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	453, 591
BssMI	GATC	5 cut(s)	31, 277, 329, 461, 596
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	696, 780
Bst6I	CTCTTC	3 cut(s)	198, 300, 372
BstAFI	CTTAAG	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	371, 715
BstF5I	GGATG	2 cut(s)	514, 682
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	5 cut(s)	34, 280, 332, 464, 599
BstMAI	GTCTC	2 cut(s)	19, 718
BstMBI	GATC	5 cut(s)	31, 277, 329, 461, 596
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	353
BstX2I	RGATCY	3 cut(s)	329, 461, 596
BstYI	RGATCY	3 cut(s)	329, 461, 596
Bsu15I	ATCGAT	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	514, 682
CfoI	GCGC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	4 cut(s)	52, 315, 490, 699
CviQI	GTAC	4 cut(s)	52, 315, 490, 699
DdeI	CTNAG	2 cut(s)	371, 715
DpnI	GATC	5 cut(s)	33, 279, 331, 463, 598
DpnII	GATC	5 cut(s)	31, 277, 329, 461, 596
DraI	TTTAAA	1 cut(s)	660
DraIII	CACNNNGTG	1 cut(s)	357
Eam1104I	CTCTTC	3 cut(s)	198, 300, 372
EarI	CTCTTC	3 cut(s)	198, 300, 372
EcoRII	CCWGG	1 cut(s)	630
FaiI	YATR	2 cut(s)	57, 276
FokI	GGATG	2 cut(s)	521, 689
GlaI	GCGC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	3 cut(s)	191, 270, 497
HinfI	GANTC	2 cut(s)	146, 530
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	7, 351, 699
Hpy188I	TCNGA	4 cut(s)	19, 198, 327, 596
Hpy188III	TCNNGA	6 cut(s)	29, 35, 154, 163, 239, 717
Hpy8I	GTNNAC	3 cut(s)	7, 351, 699
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	4 cut(s)	376, 382, 514, 667
HpyCH4III	ACNGT	2 cut(s)	696, 780
HpyCH4V	TGCA	3 cut(s)	68, 351, 553
HpyF3I	CTNAG	2 cut(s)	371, 715
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	5 cut(s)	31, 277, 329, 461, 596
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	208, 364, 719
MalI	GATC	5 cut(s)	33, 279, 331, 463, 598
MboI	GATC	5 cut(s)	31, 277, 329, 461, 596
MboII	GAAGA	8 cut(s)	50, 87, 215, 233, 317, 389, 694, 757
MflI	RGATCY	3 cut(s)	329, 461, 596
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	6 cut(s)	107, 224, 243, 417, 611, 668
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	64, 199, 520, 612, 751, 754
MseI	TTAA	4 cut(s)	131, 338, 401, 659
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	632
NdeII	GATC	5 cut(s)	31, 277, 329, 461, 596
NlaIV	GGNNCC	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	146, 530
PflFI	GACNNNGTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	329, 461, 596
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	4 cut(s)	53, 316, 491, 700
RsaNI	GTAC	4 cut(s)	52, 315, 490, 699
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	131, 338, 401, 659
Sau3AI	GATC	5 cut(s)	31, 277, 329, 461, 596
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	6 cut(s)	107, 224, 243, 417, 611, 668
StyD4I	CCNGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	696, 780
TaqI	TCGA	2 cut(s)	123, 486
TasI	AATT	6 cut(s)	107, 224, 243, 417, 611, 668
TatI	WGTACW	2 cut(s)	51, 698
TfiI	GAWTC	2 cut(s)	146, 530
Tru1I	TTAA	4 cut(s)	131, 338, 401, 659
Tru9I	TTAA	4 cut(s)	131, 338, 401, 659
TspDTI	ATGAA	7 cut(s)	153, 183, 357, 459, 489, 525, 624
TspGWI	ACGGA	1 cut(s)	194
Tth111I	GACNNNGTC	1 cut(s)	11
Vha464I	CTTAAG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.