Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGACCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCACGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAACGTGACGAGCTGACTTTGGAGTTTGATACTCTGTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACACAAGGCGAAAAGTGGACTGGCTTACTAAAAAGATGCGGACTAGTAACTTTTCTGTGTTTGCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCAGGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTACGATCTTCCAAATAATCGAGAGCTATACATACAGAGGATTGGTCGTTCGGGTCAATTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

156

Amino Acids

18.24

Weight (kDa)

6.11

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	49 - 156	7.2e-33	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	3 cut(s)	95, 106, 119
AcsI	RAATTY	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	114
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	3 cut(s)	133, 191, 430
AluI	AGCT	3 cut(s)	133, 191, 430
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	95, 106, 119
ApoI	RAATTY	1 cut(s)	69
BamHI	GGATCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	231, 292, 381
Bpu10I	CCTNAGC	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	302, 380
BseNI	ACTGG	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	301, 379
BspDI	ATCGAT	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	3 cut(s)	95, 106, 119
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	288, 366
BstKTI	GATC	6 cut(s)	48, 103, 114, 163, 183, 412
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	64
CviAII	CATG	3 cut(s)	94, 275, 283
CviJI	RGCY	5 cut(s)	133, 191, 229, 365, 430
CviKI_1	RGCY	5 cut(s)	133, 191, 229, 365, 430
DdeI	CTNAG	2 cut(s)	288, 366
DpnI	GATC	6 cut(s)	47, 102, 113, 162, 182, 411
DpnII	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
Eco24I	GRGCYC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	3 cut(s)	97, 278, 286
FaiI	YATR	8 cut(s)	95, 107, 168, 276, 284, 311, 433, 437
FatI	CATG	3 cut(s)	93, 274, 282
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	97, 278, 286
HinfI	GANTC	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	291, 324
Hpy188III	TCNNGA	3 cut(s)	94, 336, 425
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	204, 269, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	288, 366
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	97, 278, 286
Kzo9I	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	101, 128, 211, 353, 371, 380
LweI	GCATC	3 cut(s)	231, 292, 381
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	125, 251
MalI	GATC	6 cut(s)	47, 102, 113, 162, 182, 411
MboI	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
MboII	GAAGA	1 cut(s)	404
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	69, 461
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	297, 353, 435
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
NlaIII	CATG	3 cut(s)	97, 278, 286
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	93
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	6 cut(s)	45, 100, 111, 160, 180, 409
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	11, 127, 135, 193, 331, 390, 432
SfaNI	GCATC	3 cut(s)	231, 292, 381
SfcI	CTRYAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	2 cut(s)	69, 461
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	375, 424
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	69, 461
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	3 cut(s)	81, 82, 326
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.