Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTGAGCAGAGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGTATGCTTGATTTCTGCCACACTTCCAAATGAAATTCTCGAGATGACTAAACTATTCATGACTGATCCCGTAAGGATCTTGGTCAAGCGTGATGAGCTGACTTTACAGGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACATAAAGCGAAAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

194

Amino Acids

22.88

Weight (kDa)

6.84

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	98 - 157	4.2e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	30, 125, 149
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	3 cut(s)	437, 539, 547
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	19, 203, 386, 533
AluBI	AGCT	3 cut(s)	163, 266, 433
AluI	AGCT	3 cut(s)	163, 266, 433
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	3 cut(s)	30, 125, 149
Ama87I	CYCGRG	2 cut(s)	104, 369
ApoI	RAATTY	1 cut(s)	99
AvaI	CYCGRG	2 cut(s)	104, 369
BaeI	ACNNNNGTAYC	2 cut(s)	529, 562
BanII	GRGCYC	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	541
BmcAI	AGTACT	1 cut(s)	539
BmeT110I	CYCGRG	2 cut(s)	104, 369
BmsI	GCATC	3 cut(s)	295, 384, 552
Bsa29I	ATCGAT	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	378
BshVI	ATCGAT	1 cut(s)	378
BsiHKCI	CYCGRG	2 cut(s)	104, 369
BsmAI	GTCTC	1 cut(s)	519
BsoBI	CYCGRG	2 cut(s)	104, 369
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	5 cut(s)	22, 130, 141, 235, 412
BspACI	CCGC	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	123
BspPI	GGATC	3 cut(s)	30, 125, 149
BsrGI	TGTACA	1 cut(s)	435
BssMI	GATC	5 cut(s)	22, 130, 141, 235, 412
Bst4CI	ACNGT	3 cut(s)	332, 537, 545
BstAUI	TGTACA	1 cut(s)	435
BstKTI	GATC	5 cut(s)	25, 133, 144, 238, 415
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	5 cut(s)	22, 130, 141, 235, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	436, 538, 546
CviAII	CATG	3 cut(s)	56, 124, 568
CviJI	RGCY	6 cut(s)	15, 163, 266, 368, 433, 578
CviKI_1	RGCY	6 cut(s)	15, 163, 266, 368, 433, 578
CviQI	GTAC	3 cut(s)	436, 538, 546
DpnI	GATC	5 cut(s)	24, 132, 143, 237, 414
DpnII	GATC	5 cut(s)	22, 130, 141, 235, 412
Eco24I	GRGCYC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	511
Eco88I	CYCGRG	2 cut(s)	104, 369
EcoRV	GATATC	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	3 cut(s)	59, 127, 571
FaiI	YATR	9 cut(s)	57, 70, 125, 243, 284, 311, 411, 444, 569
FatI	CATG	3 cut(s)	55, 123, 567
FblI	GTMKAC	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	370
HgaI	GACGC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	59, 127, 571
HinfI	GANTC	3 cut(s)	177, 335, 342
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	7 cut(s)	104, 106, 124, 339, 428, 499, 514
Hpy8I	GTNNAC	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	332, 537, 545
HpyCH4IV	ACGT	2 cut(s)	36, 390
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpySE526I	ACGT	2 cut(s)	36, 390
Hsp92II	CATG	3 cut(s)	59, 127, 571
Kzo9I	GATC	5 cut(s)	22, 130, 141, 235, 412
LpnPI	CCDG	3 cut(s)	158, 499, 563
LweI	GCATC	3 cut(s)	295, 384, 552
MaeII	ACGT	2 cut(s)	36, 390
MalI	GATC	5 cut(s)	24, 132, 143, 237, 414
MboI	GATC	5 cut(s)	22, 130, 141, 235, 412
MboII	GAAGA	2 cut(s)	221, 407
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	3 cut(s)	99, 185, 447
MnlI	CCTC	3 cut(s)	5, 356, 365
MseI	TTAA	2 cut(s)	324, 521
MslI	CAYNNNNRTG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	5 cut(s)	22, 130, 141, 235, 412
NlaIII	CATG	3 cut(s)	59, 127, 571
PaeR7I	CTCGAG	2 cut(s)	104, 369
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	177, 335, 342
PspXI	VCTCGAGB	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	3 cut(s)	437, 539, 547
RsaNI	GTAC	3 cut(s)	436, 538, 546
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	324, 521
Sau3AI	GATC	5 cut(s)	22, 130, 141, 235, 412
ScaI	AGTACT	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	6 cut(s)	39, 165, 268, 393, 435, 481
SfaNI	GCATC	3 cut(s)	295, 384, 552
SfcI	CTRYAG	1 cut(s)	541
Sfr274I	CTCGAG	2 cut(s)	104, 369
SlaI	CTCGAG	2 cut(s)	104, 369
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	2 cut(s)	104, 369
SmoI	CTYRAG	2 cut(s)	104, 369
Sse9I	AATT	3 cut(s)	99, 185, 447
SsiI	CCGC	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	332, 537, 545
TaiI	ACGT	2 cut(s)	39, 393
TaqI	TCGA	4 cut(s)	105, 370, 378, 427
TasI	AATT	3 cut(s)	99, 185, 447
TatI	WGTACW	2 cut(s)	435, 537
TfiI	GAWTC	3 cut(s)	177, 335, 342
Tru1I	TTAA	2 cut(s)	324, 521
Tru9I	TTAA	2 cut(s)	324, 521
TscAI	CASTG	1 cut(s)	337
TspDTI	ATGAA	6 cut(s)	72, 111, 112, 329, 431, 584
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	99
XhoI	CTCGAG	2 cut(s)	104, 369
XmiI	GTMKAC	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.