Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACTGATCCCGTAAGGATCTTGGTCAAGCGTGATGAGCTGACTTTACAGGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACACAAAGCGAAAGGTCGATTGGCTCAGCGAAAAGTTGCGGAGCAATAACTTCACTGTGTCTTCAATGCATGGAGACATGCCTCAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

179

Amino Acids

21.01

Weight (kDa)

6.31

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	31 - 140	2.4e-36	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	2, 26
AfaI	GTAC	3 cut(s)	386, 488, 496
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	80, 222, 335, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	3 cut(s)	40, 143, 382
AluI	AGCT	3 cut(s)	40, 143, 382
Alw26I	GTCTC	2 cut(s)	225, 468
AlwI	GGATC	2 cut(s)	2, 26
Ama87I	CYCGRG	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	318
BaeI	ACNNNNGTAYC	2 cut(s)	478, 511
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	225, 468
BfmI	CTRYAG	1 cut(s)	490
BlpI	GCTNAGC	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	244, 333, 501
BpiI	GAAGAC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	196, 254
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	225, 468
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	7, 18, 112, 361
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	195, 253
BspDI	ATCGAT	1 cut(s)	327
BspPI	GGATC	2 cut(s)	2, 26
BsrGI	TGTACA	1 cut(s)	384
BssMI	GATC	4 cut(s)	7, 18, 112, 361
Bst4CI	ACNGT	4 cut(s)	214, 281, 486, 494
BstAUI	TGTACA	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	182, 240
BstKTI	GATC	4 cut(s)	10, 21, 115, 364
BstMAI	GTCTC	2 cut(s)	225, 468
BstMBI	GATC	4 cut(s)	7, 18, 112, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	210, 286
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	385, 487, 495
CviAII	CATG	3 cut(s)	227, 235, 517
CviJI	RGCY	6 cut(s)	40, 143, 181, 317, 382, 527
CviKI_1	RGCY	6 cut(s)	40, 143, 181, 317, 382, 527
CviQI	GTAC	3 cut(s)	385, 487, 495
DdeI	CTNAG	2 cut(s)	182, 240
DpnI	GATC	4 cut(s)	9, 20, 114, 363
DpnII	GATC	4 cut(s)	7, 18, 112, 361
Eco24I	GRGCYC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	3 cut(s)	230, 238, 520
FaiI	YATR	8 cut(s)	120, 228, 236, 260, 360, 393, 518, 538
FatI	CATG	3 cut(s)	226, 234, 516
FriOI	GRGCYC	1 cut(s)	319
HgaI	GACGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	230, 238, 520
HinfI	GANTC	3 cut(s)	54, 284, 291
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	288, 377, 448, 463
HpyCH4III	ACNGT	4 cut(s)	214, 281, 486, 494
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	156, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	182, 240
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	230, 238, 520
Kzo9I	GATC	4 cut(s)	7, 18, 112, 361
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	35, 448, 512
LweI	GCATC	3 cut(s)	244, 333, 501
MaeII	ACGT	1 cut(s)	339
MalI	GATC	4 cut(s)	9, 20, 114, 363
MboI	GATC	4 cut(s)	7, 18, 112, 361
MboII	GAAGA	3 cut(s)	98, 210, 356
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	62, 396
MnlI	CCTC	3 cut(s)	249, 305, 314
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	3 cut(s)	273, 470, 533
MslI	CAYNNNNRTG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	7, 18, 112, 361
NlaIII	CATG	3 cut(s)	230, 238, 520
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	54, 284, 291
PspXI	VCTCGAGB	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	3 cut(s)	386, 488, 496
RsaNI	GTAC	3 cut(s)	385, 487, 495
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	273, 470, 533
Sau3AI	GATC	4 cut(s)	7, 18, 112, 361
ScaI	AGTACT	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	6 cut(s)	42, 145, 174, 342, 384, 430
SfaNI	GCATC	3 cut(s)	244, 333, 501
SfcI	CTRYAG	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	62, 396
SsiI	CCGC	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	214, 281, 486, 494
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	4 cut(s)	174, 319, 327, 376
TasI	AATT	2 cut(s)	62, 396
TatI	WGTACW	2 cut(s)	384, 486
TfiI	GAWTC	3 cut(s)	54, 284, 291
Tru1I	TTAA	3 cut(s)	273, 470, 533
Tru9I	TTAA	3 cut(s)	273, 470, 533
TscAI	CASTG	2 cut(s)	217, 286
TspDTI	ATGAA	3 cut(s)	278, 380, 533
TspRI	CASTG	2 cut(s)	217, 286
XceI	RCATGY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	488
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.