Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTTGACACCGCCTCCAGAGAGTATGATATCCTTTTCTACCTAAAGTTTTTTGGTTCAGGCATTGATACTTTCTCCAACGAGGGAATTGGCGGCCCAGACAGAGAAAGTGATATTGGCAATTGGAAATTACCTAAATATTCATGCATAGGAGGCAAAAGATTGGGTGAAGATATCAGAAGGCTAGAGAACGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGACATGCTCGACAGGAAAACTCTACATCCTCGACAAATTAAATTATTAATTCTCGATGAATCTGATGAAATGTTGAGCAGTGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGTGAAATTCCAAATGAAATTCTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

6.83

Isoelectric Point (pI)

23.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	48 - 121	2.3e-13	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	3 cut(s)	12, 93, 343
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	371, 383
AgsI	TTSAA	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	371, 383
AseI	ATTAAT	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 186, 216
BseGI	GGATG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	219
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	3 cut(s)	12, 93, 343
BspANI	GGCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	330
BssMI	GATC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	4 cut(s)	144, 200, 235, 356
CviJI	RGCY	3 cut(s)	96, 184, 315
CviKI_1	RGCY	3 cut(s)	96, 184, 315
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eco32I	GATATC	2 cut(s)	31, 175
Eco88I	CYCGRG	1 cut(s)	388
EcoRV	GATATC	2 cut(s)	31, 175
EcoT22I	ATGCAT	1 cut(s)	149
FaeI	CATG	4 cut(s)	147, 203, 238, 359
FaiI	YATR	6 cut(s)	27, 145, 149, 201, 236, 357
FatI	CATG	4 cut(s)	143, 199, 234, 355
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	4 cut(s)	147, 203, 238, 359
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	225, 290
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	7, 340
Hpy188I	TCNGA	3 cut(s)	179, 295, 327
Hpy188III	TCNNGA	5 cut(s)	18, 210, 284, 388, 390
Hpy8I	GTNNAC	2 cut(s)	7, 340
HpyAV	CCTTC	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	147, 203, 238, 359
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	31, 45, 111, 195, 229, 232
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	121
MluCI	AATT	8 cut(s)	87, 121, 128, 267, 272, 279, 371, 383
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	25, 76, 146, 270
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	2 cut(s)	270, 278
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	147, 203, 238, 359
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	270, 278
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	3 cut(s)	45, 136, 339
Sfr274I	CTCGAG	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	8 cut(s)	87, 121, 128, 267, 272, 279, 371, 383
SsiI	CCGC	3 cut(s)	12, 93, 343
SspI	AATATT	1 cut(s)	140
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	217
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	4 cut(s)	240, 262, 285, 389
TasI	AATT	8 cut(s)	87, 121, 128, 267, 272, 279, 371, 383
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	270, 278
Tru9I	TTAA	2 cut(s)	270, 278
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	6 cut(s)	132, 188, 303, 312, 372, 395
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	2 cut(s)	371, 383
XceI	RCATGY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.