RchiOBHm_Chr0c44g0503721

Eukaryotic initiation factor

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
ATGGCAGCAACCGCAACCTCCAGGGCAAGCCAAACGATACGGGGTGTCAAAAACACCGTAGAGGAGAAGCTCAAGTTTGTGACCTCGGAATCTGAAGGTATAGAGCCGATAATGAGCTTCGACGATATGTGCCTTAAAGAAGAGCTCCTCCGAGGCATCTACAACCATGGCTTTGAGAAGCCCTCAGCTATCCAGCAACGGGCCATCAGACCCATTATTGAGCGCAGGGATGTTATCGCCCAGGCGCAGTCCGGTACCGGAAAGACATCAATGATTGCACTCGCCGCTTGCCAAATCGTTGACACTGCCTCCAGAGAGTATGATATCCTTTTCTACCTAAAGTTTTTTGTTTTAGTTTTATTGGAGTGGTTTACTCTTTTATTTACTTTACTACCTAGGGTTAGGGTTACTGCTAGGGGTTCAGGCATTGATACTTTCTCCAACGAGGGAATTGGCGGCCCAGACAGAGAAAGTGATATTGGCAATTGGAAATTACCTAAATATTCATGCATAGGAGGCAAAAGCTTGGGTGAAGATATCAGAAGGCTAGAGAACGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTATGACATGCTCGACAGGAAAACTCTACATCCTCGACAAATTAAATTATTAATTCTCGATGAATCTGATGAAATGTTGAGCAGAGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGTATGCTTGATTTCTGCCACACTTCCAAATGAAATTCTCGAGATGACTAAACTATTCATGACTGATCCCGTAAGGATCTTGGTCAAGCGTGATGAGCTGACTTTACAGGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACACAAAGCGAAAGGTCGATTGGCTCAGCGAAAAGTTGCGGAGCAATAACTTCACTGTGTCTTCAATGCATGGAGACATGCCTCAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACAAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTTAATATGA

Protein Analysis

441

Amino Acids

50.53

Weight (kDa)

6.24

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 63 - 106 9.3e-08 DEAD/DEAH box helicase
DEAD PF00270 169 - 255 3.3e-17 DEAD/DEAH box helicase
Helicase_C PF00271 294 - 402 2.2e-35 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 702
AciI CCGC 5 cut(s) 12, 285, 456, 706, 982
AclWI GGATC 3 cut(s) 693, 788, 812
AcsI RAATTY 1 cut(s) 762
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 4 cut(s) 256, 1172, 1274, 1282
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 1123
AgsI TTSAA 5 cut(s) 682, 866, 1008, 1121, 1268
AjnI CCWGG 2 cut(s) 20, 240
AjuI GAANNNNNNNTTGG 4 cut(s) 462, 494, 946, 978
AluBI AGCT 8 cut(s) 70, 117, 145, 188, 525, 826, 929, 1168
AluI AGCT 8 cut(s) 70, 117, 145, 188, 525, 826, 929, 1168
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 1011, 1254
AlwI GGATC 3 cut(s) 693, 788, 812
Ama87I CYCGRG 2 cut(s) 767, 1104
AoxI GGCC 2 cut(s) 201, 457
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 762
AseI ATTAAT 1 cut(s) 641
Asp718I GGTACC 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 2 cut(s) 225, 247
AspS9I GGNCC 2 cut(s) 201, 458
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 542
AvaI CYCGRG 2 cut(s) 767, 1104
AvrII CCTAGG 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 147, 1105
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 22, 242
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 1011, 1254
BfaI CTAG 3 cut(s) 396, 414, 548
BfmI CTRYAG 1 cut(s) 1276
BisI GCNGC 3 cut(s) 6, 285, 457
BlnI CCTAGG 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 968
BlsI GCNGC 3 cut(s) 7, 286, 458
BmcAI AGTACT 1 cut(s) 1274
Bme1390I CCNGG 3 cut(s) 22, 242, 582
BmeT110I CYCGRG 2 cut(s) 767, 1104
BmgT120I GGNCC 2 cut(s) 201, 458
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 22, 242, 582
BmsI GCATC 4 cut(s) 165, 1030, 1119, 1287
BpiI GAAGAC 1 cut(s) 996
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 2 cut(s) 4, 295
Bpu10I CCTNAGC 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 968
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 582
Bsa29I ATCGAT 1 cut(s) 1113
BsaJI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 395
BsaWI WCCGGW 2 cut(s) 251, 257
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 22, 242
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 395
BseGI GGATG 2 cut(s) 235, 619
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 3 cut(s) 198, 982, 1040
BseRI GAGGAG 2 cut(s) 77, 137
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 203, 459
BshNI GGYRCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 1113
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 2 cut(s) 767, 1104
BsiSI CCGG 3 cut(s) 252, 258, 582
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 1011, 1254
BsnI GGCC 2 cut(s) 203, 459
BsoBI CYCGRG 2 cut(s) 767, 1104
Bsp1286I GDGCHC 2 cut(s) 147, 1105
Bsp1407I TGTACA 1 cut(s) 1170
Bsp143I GATC 5 cut(s) 685, 793, 804, 898, 1147
Bsp1720I GCTNAGC 1 cut(s) 968
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 5 cut(s) 12, 285, 456, 706, 982
BspANI GGCC 2 cut(s) 203, 459
BspCNI CTCAG 3 cut(s) 197, 981, 1039
BspDI ATCGAT 1 cut(s) 1113
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 3 cut(s) 693, 788, 812
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 1170
BssECI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 395
BssMI GATC 5 cut(s) 685, 793, 804, 898, 1147
BssT1I CCWWGG 2 cut(s) 166, 395
Bst2UI CCWGG 2 cut(s) 22, 242
Bst4CI ACNGT 5 cut(s) 58, 1000, 1067, 1272, 1280
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 1170
BstC8I GCNNGC 2 cut(s) 28, 289
BstDEI CTNAG 3 cut(s) 184, 968, 1026
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 235, 619
BstHHI GCGC 2 cut(s) 225, 247
BstKTI GATC 5 cut(s) 688, 796, 807, 901, 1150
BstMAI GTCTC 2 cut(s) 1011, 1254
BstMBI GATC 5 cut(s) 685, 793, 804, 898, 1147
BstMWI GCNNNNNNNGC 4 cut(s) 11, 284, 516, 823
BstNI CCWGG 2 cut(s) 22, 242
BstNSI RCATGY 2 cut(s) 601, 1024
BstSCI CCNGG 3 cut(s) 20, 240, 580
BstSFI CTRYAG 1 cut(s) 1276
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 1 cut(s) 804
BstXI CCANNNNNNTGG 1 cut(s) 1309
BstYI RGATCY 1 cut(s) 804
Bsu15I ATCGAT 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 203, 459
BsuTUI ATCGAT 1 cut(s) 1113
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 235, 619
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 996, 1072
Cac8I GCNNGC 2 cut(s) 28, 289
CciI TCATGA 1 cut(s) 786
CfoI GCGC 2 cut(s) 225, 247
Cfr13I GGNCC 2 cut(s) 201, 458
ClaI ATCGAT 1 cut(s) 1113
CseI GACGC 1 cut(s) 1215
Csp6I GTAC 4 cut(s) 255, 1171, 1273, 1281
CviAII CATG 9 cut(s) 167, 507, 563, 598, 719, 787, 1013, 1021, 1303
CviQI GTAC 4 cut(s) 255, 1171, 1273, 1281
DdeI CTNAG 3 cut(s) 184, 968, 1026
DpnI GATC 5 cut(s) 687, 795, 806, 900, 1149
DpnII GATC 5 cut(s) 685, 793, 804, 898, 1147
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 166, 395
Eco24I GRGCYC 2 cut(s) 147, 1105
Eco32I GATATC 3 cut(s) 325, 538, 1246
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 2 cut(s) 767, 1104
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 20, 240
EcoRV GATATC 3 cut(s) 325, 538, 1246
EcoT14I CCWWGG 2 cut(s) 166, 395
EcoT22I ATGCAT 2 cut(s) 512, 1014
EcoT38I GRGCYC 2 cut(s) 147, 1105
ErhI CCWWGG 2 cut(s) 166, 395
FaeI CATG 9 cut(s) 170, 510, 566, 601, 722, 790, 1016, 1024, 1306
FatI CATG 9 cut(s) 166, 506, 562, 597, 718, 786, 1012, 1020, 1302
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 3 cut(s) 6, 285, 457
FokI GGATG 2 cut(s) 242, 606
FriOI GRGCYC 2 cut(s) 147, 1105
Fsp4HI GCNGC 3 cut(s) 6, 285, 457
FspBI CTAG 3 cut(s) 396, 414, 548
GlaI GCGC 2 cut(s) 224, 246
GluI GCNGC 3 cut(s) 6, 285, 457
GsuI CTGGAG 2 cut(s) 4, 295
HaeIII GGCC 2 cut(s) 203, 459
HapII CCGG 3 cut(s) 252, 258, 582
HgaI GACGC 1 cut(s) 1215
HhaI GCGC 2 cut(s) 225, 247
Hin1II CATG 9 cut(s) 170, 510, 566, 601, 722, 790, 1016, 1024, 1306
Hin6I GCGC 2 cut(s) 223, 245
HinP1I GCGC 2 cut(s) 223, 245
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 5 cut(s) 89, 588, 653, 840, 1070
HpaII CCGG 3 cut(s) 252, 258, 582
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 3 cut(s) 301, 372, 703
Hpy188I TCNGA 8 cut(s) 88, 94, 152, 209, 542, 658, 690, 1029
Hpy188III TCNNGA 9 cut(s) 312, 573, 647, 767, 769, 787, 1163, 1234, 1249
Hpy8I GTNNAC 3 cut(s) 301, 372, 703
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 89, 537
HpyCH4III ACNGT 5 cut(s) 58, 1000, 1067, 1272, 1280
HpyCH4IV ACGT 2 cut(s) 699, 1125
HpyCH4V TGCA 4 cut(s) 278, 510, 942, 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 284, 516, 823
HpyF3I CTNAG 3 cut(s) 184, 968, 1026
HpySE526I ACGT 2 cut(s) 699, 1125
Hsp92II CATG 9 cut(s) 170, 510, 566, 601, 722, 790, 1016, 1024, 1306
HspAI GCGC 2 cut(s) 223, 245
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 5 cut(s) 685, 793, 804, 898, 1147
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 150, 984
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 4 cut(s) 165, 1030, 1119, 1287
MaeI CTAG 3 cut(s) 396, 414, 548
MaeII ACGT 2 cut(s) 699, 1125
MaeIII GTNAC 2 cut(s) 79, 406
MalI GATC 5 cut(s) 687, 795, 806, 900, 1149
MboI GATC 5 cut(s) 685, 793, 804, 898, 1147
MboII GAAGA 5 cut(s) 152, 545, 884, 996, 1142
MfeI CAATTG 1 cut(s) 484
MflI RGATCY 1 cut(s) 804
MhlI GDGCHC 2 cut(s) 147, 1105
MluCI AATT 9 cut(s) 450, 484, 491, 630, 635, 642, 762, 848, 1182
MlyI GAGTC 1 cut(s) 597
MmeI TCCRAC 1 cut(s) 465
Mph1103I ATGCAT 2 cut(s) 512, 1014
MseI TTAA 6 cut(s) 135, 633, 641, 1059, 1256, 1319
MslI CAYNNNNRTG 1 cut(s) 1307
MspI CCGG 3 cut(s) 252, 258, 582
MspR9I CCNGG 3 cut(s) 22, 242, 582
MunI CAATTG 1 cut(s) 484
MvaI CCWGG 2 cut(s) 22, 242
MwoI GCNNNNNNNGC 4 cut(s) 11, 284, 516, 823
NciI CCSGG 1 cut(s) 582
NcoI CCATGG 1 cut(s) 166
NdeII GATC 5 cut(s) 685, 793, 804, 898, 1147
NlaIII CATG 9 cut(s) 170, 510, 566, 601, 722, 790, 1016, 1024, 1306
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 2 cut(s) 512, 1014
NspI RCATGY 2 cut(s) 601, 1024
PaeR7I CTCGAG 2 cut(s) 767, 1104
PagI TCATGA 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 1195
PfeI GAWTC 4 cut(s) 89, 653, 840, 1070
PkrI GCNGC 3 cut(s) 7, 286, 458
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PshBI ATTAAT 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 20, 240
PspGI CCWGG 2 cut(s) 20, 240
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 201, 458
PspXI VCTCGAGB 1 cut(s) 1104
PsuI RGATCY 1 cut(s) 804
RsaI GTAC 4 cut(s) 256, 1172, 1274, 1282
RsaNI GTAC 4 cut(s) 255, 1171, 1273, 1281
RseI CAYNNNNRTG 1 cut(s) 1307
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 6 cut(s) 135, 633, 641, 1059, 1256, 1319
SatI GCNGC 3 cut(s) 6, 285, 457
Sau3AI GATC 5 cut(s) 685, 793, 804, 898, 1147
Sau96I GGNCC 2 cut(s) 201, 458
ScaI AGTACT 1 cut(s) 1274
SchI GAGTC 1 cut(s) 597
ScrFI CCNGG 3 cut(s) 22, 242, 582
SduI GDGCHC 2 cut(s) 147, 1105
SfaNI GCATC 4 cut(s) 165, 1030, 1119, 1287
SfcI CTRYAG 1 cut(s) 1276
Sfr274I CTCGAG 2 cut(s) 767, 1104
SlaI CTCGAG 2 cut(s) 767, 1104
SmiMI CAYNNNNRTG 1 cut(s) 1307
SmlI CTYRAG 3 cut(s) 71, 767, 1104
SmoI CTYRAG 3 cut(s) 71, 767, 1104
Sse9I AATT 9 cut(s) 450, 484, 491, 630, 635, 642, 762, 848, 1182
SsiI CCGC 5 cut(s) 12, 285, 456, 706, 982
SspI AATATT 1 cut(s) 503
SspMI CTAG 3 cut(s) 396, 414, 548
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 20, 240, 580
StyI CCWWGG 2 cut(s) 166, 395
TaaI ACNGT 5 cut(s) 58, 1000, 1067, 1272, 1280
TaiI ACGT 2 cut(s) 702, 1128
TaqI TCGA 9 cut(s) 120, 603, 625, 648, 768, 960, 1105, 1113, 1162
TasI AATT 9 cut(s) 450, 484, 491, 630, 635, 642, 762, 848, 1182
TatI WGTACW 2 cut(s) 1170, 1272
TauI GCSGC 2 cut(s) 287, 459
TfiI GAWTC 4 cut(s) 89, 653, 840, 1070
Tru1I TTAA 6 cut(s) 135, 633, 641, 1059, 1256, 1319
Tru9I TTAA 6 cut(s) 135, 633, 641, 1059, 1256, 1319
TscAI CASTG 3 cut(s) 310, 1003, 1072
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 310, 1003, 1072
VspI ATTAAT 1 cut(s) 641
XapI RAATTY 1 cut(s) 762
XceI RCATGY 2 cut(s) 601, 1024
XhoI CTCGAG 2 cut(s) 767, 1104
XmaJI CCTAGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 3 cut(s) 396, 414, 548
ZrmI AGTACT 1 cut(s) 1274
Zsp2I ATGCAT 2 cut(s) 512, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.