Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACTAGCCGCTCTGCTAGGGTTACTCGAAGACTTTTCGTCTTCGATAAATCTCAAAACTATGGCTGGTGCCACAAACGGGATCGTATGCTGTCCTTTTCCGGCGTGTTTTACGGGATCGATGGTGATCCCGTCTTTTCTTTGCCGGCAGAGATGGATGTCGGGCTGGAATTGGTCTTCGACTATGGTGATGGGGCTCGTTACCCTCTGCTGGAATTGGTTCCATTGCTGACCGGGCTCCTTACTGTATGGATGGCGGCCTACAGGTGGTGCTACCATGGTGGTGGAAGCGCAAGTGGTGTATTCCGGCAAATGGTGAACAGCGGCGATGGTATGAATGCTCTCGGGCCTGTGTTTGGAGTGAATGGGCTTCTGGACTTGATCTGGTCCATGGGATGTATTATCTTTTTGCTATGGGGTTGGAGGGTTTCAGTCTCCAGGGCCTATAGTAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.98

Weight (kDa)

7.72

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	3 cut(s)	10, 257, 324
AclWI	GGATC	3 cut(s)	90, 122, 125
AfiI	CCNNNNNNNGG	5 cut(s)	79, 211, 267, 313, 356
AhdI	GACNNNNNGTC	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	3 cut(s)	90, 122, 125
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	258, 347, 441
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	3 cut(s)	347, 387, 441
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	137, 200, 328
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	199, 240
BbsI	GAAGAC	3 cut(s)	34, 37, 169
BccI	CCATC	5 cut(s)	116, 148, 185, 247, 323
BciT130I	CCWGG	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	2 cut(s)	6, 18
BfmI	CTRYAG	2 cut(s)	262, 445
BisI	GCNGC	3 cut(s)	10, 258, 325
BlsI	GCNGC	3 cut(s)	11, 259, 326
Bme1390I	CCNGG	2 cut(s)	235, 439
Bme18I	GGWCC	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	347, 387, 441
BmiI	GGNNCC	3 cut(s)	71, 222, 239
BmrFI	CCNGG	2 cut(s)	235, 439
BpiI	GAAGAC	3 cut(s)	34, 37, 169
BpmI	CTGGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	277, 390, 438
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 211, 267, 313, 356
Bse118I	RCCGGY	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	439
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	277, 390, 438
BseGI	GGATG	3 cut(s)	163, 258, 401
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	5 cut(s)	79, 211, 267, 313, 356
BseMI	GCAATG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	260, 349, 443
BshNI	GGYRCC	1 cut(s)	69
BshVI	ATCGAT	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	4 cut(s)	102, 146, 234, 307
BslI	CCNNNNNNNGG	5 cut(s)	79, 211, 267, 313, 356
BsmAI	GTCTC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	260, 349, 443
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	199, 240
Bsp143I	GATC	4 cut(s)	82, 117, 127, 381
Bsp19I	CCATGG	2 cut(s)	277, 390
BspACI	CCGC	3 cut(s)	10, 257, 324
BspANI	GGCC	3 cut(s)	260, 349, 443
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	71, 222, 239
BspPI	GGATC	3 cut(s)	90, 122, 125
BspT107I	GGYRCC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	277, 390, 438
BssMI	GATC	4 cut(s)	82, 117, 127, 381
BssT1I	CCWWGG	2 cut(s)	277, 390
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	147
BstDSI	CCRYGG	2 cut(s)	277, 390
BstF5I	GGATG	3 cut(s)	163, 258, 401
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	85, 120, 130, 384
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	4 cut(s)	82, 117, 127, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	233, 437
BstSFI	CTRYAG	2 cut(s)	262, 445
BstV2I	GAAGAC	3 cut(s)	34, 37, 169
BstXI	CCANNNNNNTGG	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	260, 349, 443
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	277, 390
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	163, 258, 401
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	347, 387, 441
ClaI	ATCGAT	1 cut(s)	120
CviAII	CATG	2 cut(s)	278, 391
CviJI	RGCY	9 cut(s)	9, 66, 166, 197, 238, 260, 349, 370, 443
CviKI_1	RGCY	9 cut(s)	9, 66, 166, 197, 238, 260, 349, 370, 443
DpnI	GATC	4 cut(s)	84, 119, 129, 383
DpnII	GATC	4 cut(s)	82, 117, 127, 381
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	277, 390
Eco24I	GRGCYC	2 cut(s)	199, 240
Eco47I	GGWCC	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	2 cut(s)	277, 390
EcoT38I	GRGCYC	2 cut(s)	199, 240
ErhI	CCWWGG	2 cut(s)	277, 390
FaeI	CATG	2 cut(s)	281, 394
FaiI	YATR	9 cut(s)	63, 89, 186, 250, 279, 335, 392, 415, 447
FatI	CATG	2 cut(s)	277, 390
Fnu4HI	GCNGC	3 cut(s)	10, 258, 325
FokI	GGATG	3 cut(s)	170, 265, 408
FriOI	GRGCYC	2 cut(s)	199, 240
Fsp4HI	GCNGC	3 cut(s)	10, 258, 325
FspBI	CTAG	2 cut(s)	6, 18
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	3 cut(s)	10, 258, 325
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	3 cut(s)	260, 349, 443
HapII	CCGG	4 cut(s)	102, 146, 234, 307
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	281, 394
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HpaII	CCGG	4 cut(s)	102, 146, 234, 307
HphI	GGTGA	3 cut(s)	137, 200, 328
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	281, 394
HspAI	GCGC	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	82, 117, 127, 381
LmnI	GCTCC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	6, 18
MaeIII	GTNAC	2 cut(s)	22, 200
MalI	GATC	4 cut(s)	84, 119, 129, 383
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	4 cut(s)	82, 117, 127, 381
MboII	GAAGA	3 cut(s)	34, 42, 169
MhlI	GDGCHC	2 cut(s)	199, 240
MluCI	AATT	2 cut(s)	170, 215
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	2 cut(s)	216, 417
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	4 cut(s)	102, 146, 234, 307
MspR9I	CCNGG	2 cut(s)	235, 439
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	235
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	2 cut(s)	277, 390
NdeII	GATC	4 cut(s)	82, 117, 127, 381
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	281, 394
NlaIV	GGNNCC	3 cut(s)	71, 222, 239
PctI	GAATGC	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	11, 259, 326
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	71, 222, 239
PspPI	GGNCC	3 cut(s)	347, 387, 441
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	3 cut(s)	10, 258, 325
Sau3AI	GATC	4 cut(s)	82, 117, 127, 381
Sau96I	GGNCC	3 cut(s)	347, 387, 441
ScrFI	CCNGG	2 cut(s)	235, 439
SduI	GDGCHC	2 cut(s)	199, 240
SetI	ASST	1 cut(s)	269
SfcI	CTRYAG	2 cut(s)	262, 445
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	2 cut(s)	170, 215
SsiI	CCGC	3 cut(s)	10, 257, 324
SspMI	CTAG	2 cut(s)	6, 18
StyD4I	CCNGG	2 cut(s)	233, 437
StyI	CCWWGG	2 cut(s)	277, 390
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	4 cut(s)	28, 45, 120, 180
TasI	AATT	2 cut(s)	170, 215
TauI	GCSGC	3 cut(s)	12, 260, 327
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	6, 18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.