Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

18595084 .. 18600367

Gene Structure 5284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTTTTCCATTTGATAGTGGCACTATTTGGCATGGCTGGGTTCGGTTAATTCTTTTGGAGGACAACGGGATCGATGGTGCTCTTGATTCTCCTTCGCCGGTAGGGTTGGATGACCGGTTGGAATTGGATATCAAGTATGGTGATGGGGTTCGTTATCTTTTGCTAGAATGGGATCCATTTCTGTATGGGTTTCTTGCTGGTATGGATGGTGGTCTCCGGGAGGATGCTGTCGGTGATGGTGGTAGTTCGGGCGTCAAACTCCGGCGAGTGGTGTATGGCGGCAACGGCTTGACTGCAATCTCATCTAGGAAATGCGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGTTTGACTGTGGTGGTGAGGTTTCAACGAGGGAGTTTAGGAGGCGTTTGAGATTTAGAAGAGACAATCTCTGTTATGCCGGAAGCCACGGCTTGGATATATCGACCCCATCAGCCTCTTCAAAATATAGTAACCACAAGCATCAATCTAGAACCACCGATGGAAAAGTAGGTAGCCGACTAGCCGCTAGCCAATTACATACAACCATGTGGAAGCTAGGAGGGGCCATGGCCATCTTAAGCAGCAATGAGGCTCTGCCGTTGAGTAGTACCGCTGAAAGAATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synth

Protein Analysis

215

Amino Acids

23.42

Weight (kDa)

5.74

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	451
AciI	CCGC	3 cut(s)	282, 543, 630
AclWI	GGATC	3 cut(s)	80, 170, 183
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	2 cut(s)	271, 451
AflII	CTTAAG	1 cut(s)	595
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	384, 480
AluBI	AGCT	1 cut(s)	574
AluI	AGCT	1 cut(s)	574
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	221, 414
AlwI	GGATC	3 cut(s)	80, 170, 183
AoxI	GGCC	2 cut(s)	582, 588
ApeKI	GCWGC	1 cut(s)	600
ApoI	RAATTY	1 cut(s)	639
AsiGI	ACCGGT	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	155, 248, 347, 386
AsuNHI	GCTAGC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	7 cut(s)	71, 140, 203, 233, 475, 512, 599
BceAI	ACGGC	3 cut(s)	304, 463, 601
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	221, 414
BfaI	CTAG	6 cut(s)	167, 309, 507, 539, 546, 575
BfrI	CTTAAG	1 cut(s)	595
BisI	GCNGC	3 cut(s)	283, 543, 601
BlsI	GCNGC	3 cut(s)	284, 544, 602
Bme1390I	CCNGG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	2 cut(s)	177, 583
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	217, 508
BmtI	GCTAGC	1 cut(s)	549
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	445, 585
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 451
Bse118I	RCCGGY	2 cut(s)	100, 117
Bse3DI	GCAATG	1 cut(s)	610
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	445, 585
BseGI	GGATG	4 cut(s)	118, 214, 232, 358
BseLI	CCNNNNNNNGG	2 cut(s)	271, 451
BseMI	GCAATG	1 cut(s)	610
BseXI	GCAGC	1 cut(s)	612
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	584, 590
BshTI	ACCGGT	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	5 cut(s)	101, 118, 220, 265, 438
BslI	CCNNNNNNNGG	2 cut(s)	271, 451
BsmAI	GTCTC	2 cut(s)	221, 414
BsnI	GGCC	2 cut(s)	584, 590
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	72, 175
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	3 cut(s)	282, 543, 630
BspANI	GGCC	2 cut(s)	584, 590
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	177, 583
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	80, 170, 183
BspTI	CTTAAG	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	2 cut(s)	100, 117
BssAI	RCCGGY	2 cut(s)	100, 117
BssECI	CCNNGG	2 cut(s)	445, 585
BssMI	GATC	2 cut(s)	72, 175
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	412, 481
BstACI	GRCGYC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	547
BstDSI	CCRYGG	2 cut(s)	445, 585
BstF5I	GGATG	4 cut(s)	118, 214, 232, 358
BstKTI	GATC	2 cut(s)	75, 178
BstMAI	GTCTC	2 cut(s)	221, 414
BstMBI	GATC	2 cut(s)	72, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	584, 590
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	2 cut(s)	445, 585
BtsCI	GGATG	4 cut(s)	118, 214, 232, 358
Cac8I	GCNNGC	1 cut(s)	547
Cfr10I	RCCGGY	2 cut(s)	100, 117
Cfr13I	GGNCC	1 cut(s)	582
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	627
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	3 cut(s)	35, 565, 586
CviQI	GTAC	1 cut(s)	627
DpnI	GATC	2 cut(s)	74, 177
DpnII	GATC	2 cut(s)	72, 175
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	412, 481
EarI	CTCTTC	2 cut(s)	412, 481
Eco130I	CCWWGG	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	3 cut(s)	38, 568, 589
FatI	CATG	3 cut(s)	34, 564, 585
Fnu4HI	GCNGC	3 cut(s)	283, 543, 601
FokI	GGATG	4 cut(s)	125, 221, 239, 365
Fsp4HI	GCNGC	3 cut(s)	283, 543, 601
FspBI	CTAG	6 cut(s)	167, 309, 507, 539, 546, 575
GluI	GCNGC	3 cut(s)	283, 543, 601
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	584, 590
HapII	CCGG	5 cut(s)	101, 118, 220, 265, 438
HgaI	GACGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	38, 568, 589
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	5 cut(s)	101, 118, 220, 265, 438
HphI	GGTGA	4 cut(s)	155, 248, 347, 386
Hpy188III	TCNNGA	2 cut(s)	86, 507
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	38, 568, 589
Kzo9I	GATC	2 cut(s)	72, 175
LpnPI	CCDG	7 cut(s)	25, 114, 131, 186, 233, 278, 451
Lsp1109I	GCAGC	1 cut(s)	612
LweI	GCATC	2 cut(s)	217, 508
MaeI	CTAG	6 cut(s)	167, 309, 507, 539, 546, 575
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	74, 177
MboI	GATC	2 cut(s)	72, 175
MboII	GAAGA	2 cut(s)	429, 468
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	4 cut(s)	51, 125, 551, 639
MluNI	TGGCCA	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	90, 102
MnlI	CCTC	9 cut(s)	55, 217, 343, 370, 381, 393, 484, 572, 601
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	50, 596
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	632
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	5 cut(s)	101, 118, 220, 265, 438
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	2 cut(s)	72, 175
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	3 cut(s)	38, 568, 589
NlaIV	GGNNCC	2 cut(s)	177, 583
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	451
PfoI	TCCNGGA	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	284, 544, 602
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	177, 583
PspPI	GGNCC	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	50, 596
SatI	GCNGC	3 cut(s)	283, 543, 601
Sau3AI	GATC	2 cut(s)	72, 175
Sau96I	GGNCC	1 cut(s)	582
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	381, 532, 576
SfaNI	GCATC	2 cut(s)	217, 508
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	4 cut(s)	51, 125, 551, 639
SsiI	CCGC	3 cut(s)	282, 543, 630
SspMI	CTAG	6 cut(s)	167, 309, 507, 539, 546, 575
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	75, 461
TasI	AATT	4 cut(s)	51, 125, 551, 639
TauI	GCSGC	2 cut(s)	285, 545
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	50, 596
Tru9I	TTAA	2 cut(s)	50, 596
TseI	GCWGC	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	451
Vha464I	CTTAAG	1 cut(s)	595
XapI	RAATTY	1 cut(s)	639
XbaI	TCTAGA	1 cut(s)	506
XspI	CTAG	6 cut(s)	167, 309, 507, 539, 546, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.