Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008611.1

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

19446 .. 20084

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008611.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgtttctgcctctcgaaagagagttctcccctcctcctcctttcttagctggtggaggctgtgtacttacgatctggaaggatgactttacctccttttgtggtccaaactgcggtggtgaagacgggcctctccatcgaatcctacctaattttttctctcaagcttctgatgggggaggtaaaggtgatctggtgtttgaccggctctacagaggtatgatcgtgggtgacacgaatggcggcacttggtgtctgaggccgttggagatactgggttttttgtttaatggtggcgctcttatggaggacaaagggaccggtggtgttcttgatttttctttgcctgtagaggtggatgtcgggctggaattgggttttgagtatggtggtgggacacgttctcctatgctagaattgggtccattcctgtccgggctgcttgctagtatgggcggcggcctccaggaggatgctatcaatggtggtggtagcgtaggcgacgtactccggcgagtggtgtatggcgacggcggcttgactgcattctcatctagggtttaccctaggtgttttggttgggcctggtattgggctgctagggctttgttttggcctaggcagttgctttgtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.72

Weight (kDa)

4.6

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	114, 243, 456, 459, 534
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	66, 507
AfiI	CCNNNNNNNGG	4 cut(s)	113, 469, 517, 591
AflIII	ACRYGT	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	465, 584
AluBI	AGCT	2 cut(s)	50, 167
AluI	AGCT	2 cut(s)	50, 167
AoxI	GGCC	5 cut(s)	128, 260, 460, 582, 614
ApeKI	GCWGC	2 cut(s)	439, 596
AsiGI	ACCGGT	1 cut(s)	320
AspA2I	CCTAGG	2 cut(s)	566, 617
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	5 cut(s)	104, 128, 318, 422, 582
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	131, 200, 242
AvaII	GGWCC	3 cut(s)	104, 318, 422
AvrII	CCTAGG	2 cut(s)	566, 617
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	426, 583
BccI	CCATC	2 cut(s)	144, 167
BceAI	ACGGC	2 cut(s)	247, 547
BciT130I	CCWGG	2 cut(s)	467, 586
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	6 cut(s)	413, 447, 555, 567, 600, 618
BfmI	CTRYAG	2 cut(s)	211, 348
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	6 cut(s)	244, 440, 457, 460, 535, 597
BlnI	CCTAGG	2 cut(s)	566, 617
BlsI	GCNGC	6 cut(s)	245, 441, 458, 461, 536, 598
Bme1390I	CCNGG	3 cut(s)	436, 467, 586
Bme18I	GGWCC	3 cut(s)	104, 318, 422
BmgT120I	GGNCC	5 cut(s)	104, 128, 318, 422, 582
BmiI	GGNNCC	2 cut(s)	319, 423
BmrFI	CCNGG	3 cut(s)	436, 467, 586
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	566, 617
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 77, 78, 107, 388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 469, 517, 591
Bse118I	RCCGGY	2 cut(s)	204, 320
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	467, 586
BseDI	CCNNGG	2 cut(s)	566, 617
BseGI	GGATG	3 cut(s)	88, 364, 478
BseLI	CCNNNNNNNGG	4 cut(s)	113, 469, 517, 591
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	24, 27
BseXI	GCAGC	2 cut(s)	426, 583
BshFI	GGCC	5 cut(s)	130, 262, 462, 584, 616
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	205, 321, 435, 511
BslFI	GGGAC	2 cut(s)	331, 409
BslI	CCNNNNNNNGG	4 cut(s)	113, 469, 517, 591
BsmFI	GGGAC	2 cut(s)	331, 409
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	5 cut(s)	130, 262, 462, 584, 616
Bsp143I	GATC	3 cut(s)	72, 190, 222
BspACI	CCGC	5 cut(s)	114, 243, 456, 459, 534
BspANI	GGCC	5 cut(s)	130, 262, 462, 584, 616
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	319, 423
BsrFI	RCCGGY	2 cut(s)	204, 320
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	2 cut(s)	204, 320
BssECI	CCNNGG	2 cut(s)	566, 617
BssMI	GATC	3 cut(s)	72, 190, 222
BssT1I	CCWWGG	2 cut(s)	566, 617
Bst2UI	CCWGG	2 cut(s)	467, 586
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	46, 257
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	88, 364, 478
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	75, 193, 225
BstMBI	GATC	3 cut(s)	72, 190, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 602
BstNI	CCWGG	2 cut(s)	467, 586
BstSCI	CCNGG	3 cut(s)	434, 465, 584
BstSFI	CTRYAG	2 cut(s)	211, 348
BstV1I	GCAGC	2 cut(s)	426, 583
BstV2I	GAAGAC	1 cut(s)	129
BsuRI	GGCC	5 cut(s)	130, 262, 462, 584, 616
BtsCI	GGATG	3 cut(s)	88, 364, 478
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	2 cut(s)	204, 320
Cfr13I	GGNCC	5 cut(s)	104, 128, 318, 422, 582
Csp6I	GTAC	2 cut(s)	65, 506
CspAI	ACCGGT	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviQI	GTAC	2 cut(s)	65, 506
DdeI	CTNAG	2 cut(s)	46, 257
DpnI	GATC	3 cut(s)	74, 192, 224
DpnII	GATC	3 cut(s)	72, 190, 222
DraIII	CACNNNGTG	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	566, 617
Eco47I	GGWCC	3 cut(s)	104, 318, 422
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	465, 584
EcoT14I	CCWWGG	2 cut(s)	566, 617
ErhI	CCWWGG	2 cut(s)	566, 617
FaiI	YATR	6 cut(s)	221, 305, 387, 410, 452, 525
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	2 cut(s)	331, 409
Fnu4HI	GCNGC	6 cut(s)	244, 440, 457, 460, 535, 597
FokI	GGATG	3 cut(s)	95, 371, 485
Fsp4HI	GCNGC	6 cut(s)	244, 440, 457, 460, 535, 597
FspBI	CTAG	6 cut(s)	413, 447, 555, 567, 600, 618
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	6 cut(s)	244, 440, 457, 460, 535, 597
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	130, 262, 462, 584, 616
HapII	CCGG	4 cut(s)	205, 321, 435, 511
HhaI	GCGC	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	4 cut(s)	205, 321, 435, 511
HphI	GGTGA	3 cut(s)	131, 200, 242
Hpy166II	GTNNAC	2 cut(s)	65, 562
Hpy188I	TCNGA	2 cut(s)	172, 258
Hpy188III	TCNNGA	3 cut(s)	14, 76, 332
Hpy8I	GTNNAC	2 cut(s)	65, 562
Hpy99I	CGWCG	2 cut(s)	506, 533
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	400, 504
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 602
HpyF3I	CTNAG	2 cut(s)	46, 257
HpySE526I	ACGT	2 cut(s)	400, 504
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	72, 190, 222
Lsp1109I	GCAGC	2 cut(s)	426, 583
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	6 cut(s)	413, 447, 555, 567, 600, 618
MaeII	ACGT	2 cut(s)	400, 504
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	74, 192, 224
MboI	GATC	3 cut(s)	72, 190, 222
MboII	GAAGA	1 cut(s)	134
MluCI	AATT	3 cut(s)	151, 371, 416
MmeI	TCCRAC	1 cut(s)	246
MseI	TTAA	2 cut(s)	288, 637
MspI	CCGG	4 cut(s)	205, 321, 435, 511
MspR9I	CCNGG	3 cut(s)	436, 467, 586
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	2 cut(s)	467, 586
MwoI	GCNNNNNNNGC	2 cut(s)	534, 602
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	72, 190, 222
NlaIV	GGNNCC	2 cut(s)	319, 423
NmuCI	GTSAC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	245, 441, 458, 461, 536, 598
Psp6I	CCWGG	2 cut(s)	465, 584
PspGI	CCWGG	2 cut(s)	465, 584
PspN4I	GGNNCC	2 cut(s)	319, 423
PspPI	GGNCC	5 cut(s)	104, 128, 318, 422, 582
RsaI	GTAC	2 cut(s)	66, 507
RsaNI	GTAC	2 cut(s)	65, 506
SaqAI	TTAA	2 cut(s)	288, 637
SatI	GCNGC	6 cut(s)	244, 440, 457, 460, 535, 597
Sau3AI	GATC	3 cut(s)	72, 190, 222
Sau96I	GGNCC	5 cut(s)	104, 128, 318, 422, 582
ScrFI	CCNGG	3 cut(s)	436, 467, 586
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	2 cut(s)	211, 348
SinI	GGWCC	3 cut(s)	104, 318, 422
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	151, 371, 416
SsiI	CCGC	5 cut(s)	114, 243, 456, 459, 534
SspMI	CTAG	6 cut(s)	413, 447, 555, 567, 600, 618
StyD4I	CCNGG	3 cut(s)	434, 465, 584
StyI	CCWWGG	2 cut(s)	566, 617
TaiI	ACGT	2 cut(s)	403, 507
TaqI	TCGA	2 cut(s)	15, 139
TasI	AATT	3 cut(s)	151, 371, 416
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	4 cut(s)	246, 459, 462, 537
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	288, 637
Tru9I	TTAA	2 cut(s)	288, 637
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	439, 596
Tsp45I	GTSAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	104, 318, 422
XagI	CCTNNNNNAGG	1 cut(s)	467
XmaJI	CCTAGG	2 cut(s)	566, 617
XspI	CTAG	6 cut(s)	413, 447, 555, 567, 600, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.