Rh3BG141000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003073
Physical Location & Seq
Forward (+)
11936081 .. 11936802
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG141000.1

Sequence Viewer

Length: 360 bp
ATGTTTCTGCCTCTCTCCCGAGAGCTCTCTCCTCCGCCTCCACTCTTCGCTGGCGGAGGCAGTGTACTTTCGATCTGGAAGGATGGAGTTGCCTCCTTCTATGGTCCAATCTGTGGTGGTAAAGACGGGCCTCTTCGTCGAAACCTGCCTAAAGTTCTCTTTCAAGCTGATGGCGGAATTAACGGGGATCTGATGTTTGATCGGATCTACAGAGGAGTACTCGTGGGTGAAGCGACTGGCGGCGCTTGGTGGCTGCTGCGGTCCAGGGCTGTAACGTCTGGTTCGCGTTGGAGAACTGATGGATCTGTTCGGATGGATTGCAAGAGGATGGGTTTTCCATTCGATGGTGGCACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.86

Weight (kDa)

9.77

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AccB7I CCANNNNNTGG 2 cut(s) 113, 344
AccII CGCG 1 cut(s) 286
AciI CCGC 5 cut(s) 35, 54, 174, 240, 259
AclWI GGATC 3 cut(s) 195, 212, 310
AfaI GTAC 2 cut(s) 66, 219
AfiI CCNNNNNNNGG 2 cut(s) 113, 344
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 2 cut(s) 25, 167
AluI AGCT 2 cut(s) 25, 167
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 3 cut(s) 195, 212, 310
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 253, 256
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 104, 128, 261
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 2 cut(s) 104, 261
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 240, 243
BccI CCATC 6 cut(s) 77, 164, 293, 307, 322, 338
BciT130I CCWGG 1 cut(s) 265
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 3 cut(s) 241, 254, 257
BlsI GCNGC 3 cut(s) 242, 255, 258
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 104, 261
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 104, 128, 261
BmrFI CCNGG 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 207, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 344
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 88, 318, 333
BseLI CCNNNNNNNGG 2 cut(s) 113, 344
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 21, 228
BseXI GCAGC 2 cut(s) 240, 243
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 113, 344
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 5 cut(s) 72, 187, 199, 204, 302
BspACI CCGC 5 cut(s) 35, 54, 174, 240, 259
BspANI GGCC 1 cut(s) 130
BspFNI CGCG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 195, 212, 310
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 5 cut(s) 72, 187, 199, 204, 302
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 50, 138
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 3 cut(s) 88, 318, 333
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 5 cut(s) 75, 190, 202, 207, 305
BstMBI GATC 5 cut(s) 72, 187, 199, 204, 302
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 240, 243
BstX2I RGATCY 3 cut(s) 187, 204, 302
BstYI RGATCY 3 cut(s) 187, 204, 302
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 3 cut(s) 88, 318, 333
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 104, 128, 261
Csp6I GTAC 2 cut(s) 65, 218
CviJI RGCY 5 cut(s) 25, 130, 167, 253, 269
CviKI_1 RGCY 5 cut(s) 25, 130, 167, 253, 269
CviQI GTAC 2 cut(s) 65, 218
DpnI GATC 5 cut(s) 74, 189, 201, 206, 304
DpnII GATC 5 cut(s) 72, 187, 199, 204, 302
Eam1104I CTCTTC 2 cut(s) 50, 138
EarI CTCTTC 2 cut(s) 50, 138
EciI GGCGGA 3 cut(s) 24, 69, 189
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 104, 261
Eco53kI GAGCTC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 27
FaiI YATR 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 241, 254, 257
FokI GGATG 3 cut(s) 95, 325, 340
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 241, 254, 257
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 241, 254, 257
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 130
HhaI GCGC 1 cut(s) 245
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 4 cut(s) 192, 204, 312, 359
Hpy188III TCNNGA 2 cut(s) 18, 76
Hpy8I GTNNAC 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 73, 106
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 275
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 5 cut(s) 72, 187, 199, 204, 302
LpnPI CCDG 7 cut(s) 36, 61, 158, 222, 250, 264, 277
Lsp1109I GCAGC 2 cut(s) 240, 243
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 271
MalI GATC 5 cut(s) 74, 189, 201, 206, 304
MboI GATC 5 cut(s) 72, 187, 199, 204, 302
MboII GAAGA 2 cut(s) 37, 125
MflI RGATCY 3 cut(s) 187, 204, 302
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 21, 42, 48, 50, 103, 141, 206, 318
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 286
NdeII GATC 5 cut(s) 72, 187, 199, 204, 302
PflMI CCANNNNNTGG 2 cut(s) 113, 344
PkrI GCNGC 3 cut(s) 242, 255, 258
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspPI GGNCC 3 cut(s) 104, 128, 261
PsuI RGATCY 3 cut(s) 187, 204, 302
RsaI GTAC 2 cut(s) 66, 219
RsaNI GTAC 2 cut(s) 65, 218
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 241, 254, 257
Sau3AI GATC 5 cut(s) 72, 187, 199, 204, 302
Sau96I GGNCC 3 cut(s) 104, 128, 261
ScaI AGTACT 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 27, 147, 169, 278
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 2 cut(s) 104, 261
Sse9I AATT 1 cut(s) 177
SsiI CCGC 5 cut(s) 35, 54, 174, 240, 259
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 71, 139, 342
TasI AATT 1 cut(s) 177
TatI WGTACW 2 cut(s) 64, 217
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 67
TseI GCWGC 2 cut(s) 253, 256
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 2 cut(s) 113, 344
VpaK11BI GGWCC 2 cut(s) 104, 261
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.