Rh2AG507500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003073
Physical Location & Seq
Reverse (-)
73139372 .. 73139602
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG507500.1

Sequence Viewer

Length: 231 bp
ATGGAGCCTCCGGGGCCACAGCTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTCGGAGTCGCGGTGGCGGAAGTGGTCGAACGGCCTTAATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACCGTGAAAGTTTTCATGTGGGATTCCAATTTTGGGAGTGGAGATAGGAGATTGAAATTTTGGATTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.72

Weight (kDa)

10.81

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AccII CGCG 1 cut(s) 70
AciI CCGC 4 cut(s) 40, 70, 76, 105
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 2 cut(s) 22, 55
AluI AGCT 2 cut(s) 22, 55
AoxI GGCC 3 cut(s) 14, 91, 109
ApeKI GCWGC 2 cut(s) 43, 142
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 12
BbvI GCAGC 2 cut(s) 30, 129
BceAI ACGGC 2 cut(s) 96, 106
BcnI CCSGG 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 3 cut(s) 41, 44, 143
BlsI GCNGC 3 cut(s) 42, 45, 144
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 6, 15
BmrFI CCNGG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 11, 112
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 11, 112
BseLI CCNNNNNNNGG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 30, 129
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 16, 93, 111
BsiSI CCGG 2 cut(s) 11, 139
BslI CCNNNNNNNGG 1 cut(s) 189
BsnI GGCC 3 cut(s) 16, 93, 111
BspACI CCGC 4 cut(s) 40, 70, 76, 105
BspANI GGCC 3 cut(s) 16, 93, 111
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 6, 15
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 11, 112
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 48, 57, 140
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 13, 52, 56, 135
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 30, 129
BsuRI GGCC 3 cut(s) 16, 93, 111
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 48, 57, 140
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 48
CviAII CATG 1 cut(s) 172
CviJI RGCY 8 cut(s) 7, 16, 22, 43, 55, 93, 111, 142
CviKI_1 RGCY 8 cut(s) 7, 16, 22, 43, 55, 93, 111, 142
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 1 cut(s) 91
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 41, 44, 143
Fsp4HI GCNGC 3 cut(s) 41, 44, 143
GluI GCNGC 3 cut(s) 41, 44, 143
HaeIII GGCC 3 cut(s) 16, 93, 111
HapII CCGG 2 cut(s) 11, 139
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 175
HinfI GANTC 3 cut(s) 25, 65, 179
HpaII CCGG 2 cut(s) 11, 139
Hpy188I TCNGA 2 cut(s) 64, 150
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 52, 56, 135
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 175
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 4, 37
LpnPI CCDG 4 cut(s) 24, 32, 41, 152
Lsp1109I GCAGC 2 cut(s) 30, 129
MbiI CCGCTC 1 cut(s) 40
MluCI AATT 2 cut(s) 184, 212
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 2 cut(s) 12, 42
MnlI CCTC 3 cut(s) 18, 28, 156
MroNI GCCGGC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 2 cut(s) 11, 139
MspR9I CCNGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 4 cut(s) 13, 52, 56, 135
NaeI GCCGGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 12
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 6, 15
PdiI GCCGGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 25, 179
PkrI GCNGC 3 cut(s) 42, 45, 144
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 6, 15
PspPI GGNCC 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 41, 44, 143
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 12
SetI ASST 2 cut(s) 24, 57
Sse9I AATT 2 cut(s) 184, 212
SsiI CCGC 4 cut(s) 40, 70, 76, 105
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 86, 123
TasI AATT 2 cut(s) 184, 212
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 25, 179
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 2 cut(s) 43, 142
TspDTI ATGAA 2 cut(s) 109, 160
TspGWI ACGGA 1 cut(s) 18
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.