Rh5AG334300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003073
Physical Location & Seq
Reverse (-)
53552559 .. 53552992
434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG334300.1

Sequence Viewer

Length: 282 bp
ATGGAGCCTCCGAGGTCGCCGCTGATTCCGTTGGAGCAGCGGCTGCTGGCGAAACTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGACCTTGATGGTAGCGGTGGCCGTGGGTTCATCAACTGCTTGGGTCGCCGGCGGCCTCTGATATTGACCGTGAAAGTTTTCAGTAACTGTGGTCGGGGCCGAGCTCATGTTCGAGGCCGAAATCGGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCGGAGCTTGCTTCGGAGGTGCAGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.28

Weight (kDa)

11.34

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 20, 40, 76, 105, 142, 252, 275
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 59
AluBI AGCT 2 cut(s) 194, 257
AluI AGCT 2 cut(s) 194, 257
Alw21I GWGCWC 1 cut(s) 196
AlwNI CAGNNNCTG 2 cut(s) 43, 177
AoxI GGCC 4 cut(s) 109, 143, 187, 205
ApeKI GCWGC 3 cut(s) 37, 43, 272
ApoI RAATTY 1 cut(s) 217
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 30, 49
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 96
BisI GCNGC 6 cut(s) 20, 38, 41, 44, 143, 273
BlsI GCNGC 6 cut(s) 21, 39, 42, 45, 144, 274
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 6, 188
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 11, 112
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 11, 112
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 30, 49
BshFI GGCC 4 cut(s) 111, 145, 189, 207
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 139
BsnI GGCC 4 cut(s) 111, 145, 189, 207
Bsp1286I GDGCHC 1 cut(s) 196
BspACI CCGC 7 cut(s) 20, 40, 76, 105, 142, 252, 275
BspANI GGCC 4 cut(s) 111, 145, 189, 207
BspLI GGNNCC 2 cut(s) 6, 188
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 11, 112
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 160, 179
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 3 cut(s) 48, 140, 259
BstDSI CCRYGG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 43, 56, 135, 258
BstV1I GCAGC 2 cut(s) 30, 49
BsuRI GGCC 4 cut(s) 111, 145, 189, 207
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 48, 140, 259
CaiI CAGNNNCTG 2 cut(s) 43, 177
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 48
CviAII CATG 1 cut(s) 197
CviJI RGCY 9 cut(s) 7, 43, 111, 145, 189, 194, 207, 245, 257
CviKI_1 RGCY 9 cut(s) 7, 43, 111, 145, 189, 194, 207, 245, 257
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 2 cut(s) 91, 267
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 6 cut(s) 20, 38, 41, 44, 143, 273
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 6 cut(s) 20, 38, 41, 44, 143, 273
GluI GCNGC 6 cut(s) 20, 38, 41, 44, 143, 273
HaeIII GGCC 4 cut(s) 111, 145, 189, 207
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 200
HinfI GANTC 2 cut(s) 25, 65
HpaII CCGG 1 cut(s) 139
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 5 cut(s) 12, 64, 150, 216, 266
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 160, 179
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 56, 135, 258
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 200
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 4, 34, 254
LpnPI CCDG 4 cut(s) 32, 41, 152, 231
Lsp1109I GCAGC 2 cut(s) 30, 49
MaeIII GTNAC 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 2 cut(s) 12, 42
MnlI CCTC 5 cut(s) 6, 18, 156, 197, 260
MreI CGCCGGCG 1 cut(s) 138
MroNI GCCGGC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 167
MspA1I CMGCKG 3 cut(s) 22, 40, 275
MspI CCGG 1 cut(s) 139
MwoI GCNNNNNNNGC 4 cut(s) 43, 56, 135, 258
NaeI GCCGGC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 2 cut(s) 6, 188
NmeAIII GCCGAG 1 cut(s) 215
PdiI GCCGGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 6 cut(s) 21, 39, 42, 45, 144, 274
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 6, 188
PspPI GGNCC 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 43, 177
SacI GAGCTC 1 cut(s) 196
SatI GCNGC 6 cut(s) 20, 38, 41, 44, 143, 273
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 196
SetI ASST 5 cut(s) 17, 96, 196, 259, 271
SgrAI CRCCGGYG 1 cut(s) 138
Sse9I AATT 1 cut(s) 217
SsiI CCGC 7 cut(s) 20, 40, 76, 105, 142, 252, 275
SstI GAGCTC 1 cut(s) 196
TaaI ACNGT 2 cut(s) 160, 179
TaqI TCGA 2 cut(s) 86, 202
TasI AATT 1 cut(s) 217
TauI GCSGC 3 cut(s) 22, 43, 145
TfiI GAWTC 1 cut(s) 25
TseI GCWGC 3 cut(s) 37, 43, 272
TspDTI ATGAA 2 cut(s) 109, 210
TspGWI ACGGA 1 cut(s) 18
XapI RAATTY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.