Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

12336333 .. 12336923

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTTCTGCCTCTCGAAAGAGAGCTTTCTCCTCCGCTTCCTCTCTACGCTGGTGGAGGCAGTGTACTTTCGATCTGGAAGGATGGCTTTGCCTCCTTCTATGGTCCATACTGTGGTGGTGGAGACGGGCTCCTCCATGGAAATCTGCCCAAATCTCTCTCTCAAGCTTCTGATGGCAGAAGTGAGGGTGATTTGGTGTTTGATCGGGTCTACAGTGGTGTGCTCGTGGGTGAAACGACTTGTGGCGCTTGGAGAGCTGATGGATCTGATCGGATCTGGAATTTGGCTTACAAGAGGCTGAGCTTGCCGGCTGATGGTAGCGCTCTCTGGCATGGCTGGGATCGATCGTTTTTGTTGGAGGACAACGGGATCAGTGGTGCTCTCGATTCTTCTTTACTAGCAGAGGTGGATGACGGGCTGGCATTGGGCGTCGAGAGGATGCTATCAGTGATGGTGGTCGTGCAGGGGTCAAACTCCGGTGAGTGGTGTATGATGGCGGCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

17.85

Weight (kDa)

4.43

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	3 cut(s)	35, 497, 500
AclWI	GGATC	4 cut(s)	271, 281, 348, 377
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	66
AfeI	AGCGCT	1 cut(s)	322
AfiI	CCNNNNNNNGG	3 cut(s)	113, 314, 483
AluBI	AGCT	4 cut(s)	25, 167, 257, 303
AluI	AGCT	4 cut(s)	25, 167, 257, 303
Alw21I	GWGCWC	2 cut(s)	225, 382
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	271, 281, 348, 377
Aor51HI	AGCGCT	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	2 cut(s)	248, 323
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	200, 242, 491
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	225, 382
BccI	CCATC	6 cut(s)	77, 167, 254, 308, 445, 487
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	2 cut(s)	249, 324
BisI	GCNGC	2 cut(s)	498, 501
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	499, 502
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 314, 483
Bse118I	RCCGGY	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	88, 415, 444
BseLI	CCNNNNNNNGG	3 cut(s)	113, 314, 483
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	21, 122
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	225, 382
BsiSI	CCGG	2 cut(s)	308, 477
BslI	CCNNNNNNNGG	3 cut(s)	113, 314, 483
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	3 cut(s)	132, 225, 382
Bsp143I	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	3 cut(s)	35, 497, 500
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	4 cut(s)	271, 281, 348, 377
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	113, 215
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	305, 309, 420
BstDEI	CTNAG	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	88, 415, 444
BstH2I	RGCGCY	2 cut(s)	249, 324
BstHHI	GCGC	2 cut(s)	248, 323
BstKTI	GATC	8 cut(s)	75, 205, 266, 271, 276, 343, 347, 372
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 304
BstSFI	CTRYAG	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	263, 273
BstYI	RGATCY	2 cut(s)	263, 273
Bsu15I	ATCGAT	1 cut(s)	343
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	88, 415, 444
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	4 cut(s)	67, 220, 379, 453
Cac8I	GCNNGC	3 cut(s)	305, 309, 420
CfoI	GCGC	2 cut(s)	248, 323
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	137, 332
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	8 cut(s)	74, 204, 265, 270, 275, 342, 346, 371
DpnII	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	104
Eco47III	AGCGCT	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	140, 335
FaiI	YATR	5 cut(s)	102, 109, 138, 333, 491
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	2 cut(s)	136, 331
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	498, 501
FokI	GGATG	3 cut(s)	95, 422, 451
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	498, 501
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	247, 322
GluI	GCNGC	2 cut(s)	498, 501
GsaI	CCCAGC	1 cut(s)	340
HaeII	RGCGCY	2 cut(s)	249, 324
HapII	CCGG	2 cut(s)	308, 477
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	248, 323
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	140, 335
Hin6I	GCGC	2 cut(s)	246, 321
HinP1I	GCGC	2 cut(s)	246, 321
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	2 cut(s)	308, 477
HphI	GGTGA	3 cut(s)	200, 242, 491
Hpy166II	GTNNAC	2 cut(s)	65, 211
Hpy188I	TCNGA	3 cut(s)	172, 268, 273
Hpy188III	TCNNGA	5 cut(s)	14, 76, 277, 383, 433
Hpy8I	GTNNAC	2 cut(s)	65, 211
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	73, 106
HpyCH4III	ACNGT	2 cut(s)	113, 215
HpyCH4V	TGCA	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 304
HpyF3I	CTNAG	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	140, 335
HspAI	GCGC	2 cut(s)	246, 321
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	36, 61, 262, 313, 321, 322, 404, 449, 490
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	398
MalI	GATC	8 cut(s)	74, 204, 265, 270, 275, 342, 346, 371
MboI	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
MboII	GAAGA	1 cut(s)	381
MflI	RGATCY	2 cut(s)	263, 273
MhlI	GDGCHC	3 cut(s)	132, 225, 382
MluCI	AATT	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	336
MroNI	GCCGGC	1 cut(s)	307
MspI	CCGG	2 cut(s)	308, 477
MwoI	GCNNNNNNNGC	2 cut(s)	254, 304
NaeI	GCCGGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	140, 335
NlaIV	GGNNCC	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	499, 502
Ple19I	CGATCG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	263, 273
PvuI	CGATCG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	498, 501
Sau3AI	GATC	8 cut(s)	72, 202, 263, 268, 273, 340, 344, 369
Sau96I	GGNCC	1 cut(s)	104
SduI	GDGCHC	3 cut(s)	132, 225, 382
SetI	ASST	5 cut(s)	27, 169, 259, 305, 408
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	3 cut(s)	35, 497, 500
SspMI	CTAG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	113, 215
TaqI	TCGA	5 cut(s)	15, 71, 343, 384, 432
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	2 cut(s)	500, 503
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	4 cut(s)	67, 220, 379, 453
TspRI	CASTG	4 cut(s)	67, 220, 379, 453
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.