Rh7AG393300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003073
Physical Location & Seq
Forward (+)
51538126 .. 51539232
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG393300.1

Sequence Viewer

Length: 303 bp
ATGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACATCGGAGTCGAGCCCACTGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGACATTGCTTGTTCTTGTTTTCTCAATTTGAATTGGATTAGAAGTTGTCAAATTGCTGCATTTGCATGTAATGTGAGATTCTTGATGTTGGGGGCGGTAACTGTGGTCGGGGCTGAGCTCACGTTCGAGGCCGAAATCGGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCGGAGCTTACTTCGGAGGTTGCGGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.48

Weight (kDa)

4.8

Isoelectric Point (pI)

74.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 5
AciI CCGC 4 cut(s) 191, 272, 293, 296
AcsI RAATTY 2 cut(s) 31, 237
AcyI GRCGYC 2 cut(s) 8, 93
AgsI TTSAA 2 cut(s) 84, 127
AluBI AGCT 4 cut(s) 69, 87, 214, 277
AluI AGCT 4 cut(s) 69, 87, 214, 277
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 66, 152
ApoI RAATTY 2 cut(s) 31, 237
AspLEI GCGC 2 cut(s) 66, 95
AsuHPI GGTGA 3 cut(s) 3, 63, 262
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 59, 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 78, 139
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 3 cut(s) 67, 153, 294
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 3 cut(s) 68, 154, 295
BmiI GGNNCC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 8, 93
Bse3DI GCAATG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 89, 201
BseXI GCAGC 2 cut(s) 78, 139
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 216
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 59, 216
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 4 cut(s) 191, 272, 293, 296
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 88, 202
BspLI GGNNCC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 99
BssNI GRCGYC 2 cut(s) 8, 93
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 8, 93
BstDEI CTNAG 2 cut(s) 75, 210
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 66, 95
BstMWI GCNNNNNNNGC 3 cut(s) 63, 101, 158
BstNSI RCATGY 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 78, 139
BsuRI GGCC 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
CfoI GCGC 2 cut(s) 66, 95
CviAII CATG 1 cut(s) 162
CviJI RGCY 8 cut(s) 57, 69, 87, 209, 214, 227, 265, 277
CviKI_1 RGCY 8 cut(s) 57, 69, 87, 209, 214, 227, 265, 277
DdeI CTNAG 2 cut(s) 75, 210
DinI GGCGCC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 59, 216
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 59, 216
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 1 cut(s) 165
FaiI YATR 1 cut(s) 163
FatI CATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 67, 153, 294
FriOI GRGCYC 2 cut(s) 59, 216
Fsp4HI GCNGC 3 cut(s) 67, 153, 294
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 2 cut(s) 65, 94
GluI GCNGC 3 cut(s) 67, 153, 294
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 1 cut(s) 227
HhaI GCGC 2 cut(s) 66, 95
Hin1I GRCGYC 2 cut(s) 8, 93
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 2 cut(s) 64, 93
HinP1I GCGC 2 cut(s) 64, 93
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 50, 174
HphI GGTGA 3 cut(s) 3, 63, 262
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 49, 78, 236, 286
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 8, 218
HpyCH4V TGCA 2 cut(s) 155, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 101, 158
HpyF3I CTNAG 2 cut(s) 75, 210
HpySE526I ACGT 2 cut(s) 8, 218
Hsp92I GRCGYC 2 cut(s) 8, 93
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 2 cut(s) 64, 93
KasI GGCGCC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 75, 251
Lsp1109I GCAGC 2 cut(s) 78, 139
MaeII ACGT 2 cut(s) 8, 218
MaeIII GTNAC 2 cut(s) 9, 193
MhlI GDGCHC 2 cut(s) 59, 216
MluCI AATT 5 cut(s) 31, 121, 127, 147, 237
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 49, 84, 217, 280
MslI CAYNNNNRTG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 63, 101, 158
NarI GGCGCC 1 cut(s) 93
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 9
NsbI TGCGCA 1 cut(s) 65
NspI RCATGY 1 cut(s) 165
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 3 cut(s) 68, 154, 295
PleI GAGTC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 3 cut(s) 67, 153, 294
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 59, 216
SetI ASST 8 cut(s) 11, 71, 76, 89, 216, 221, 279, 291
SfoI GGCGCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 5 cut(s) 31, 121, 127, 147, 237
SsiI CCGC 4 cut(s) 191, 272, 293, 296
SspDI GGCGCC 1 cut(s) 92
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 2 cut(s) 11, 221
TaqI TCGA 3 cut(s) 5, 53, 222
TasI AATT 5 cut(s) 31, 121, 127, 147, 237
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 174
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 2 cut(s) 66, 152
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 66
XapI RAATTY 2 cut(s) 31, 237
XceI RCATGY 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 5
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.