Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

21842878 .. 21850202

Gene Structure 7325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0152500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTATTTTGATGGATATGGGTATCATGGGACGTCATTCGAGCAGACATATCGATGTTATCCTGCATCATTTATTGAAAAGCCGCAACTTGAAAGTGGTGATAAAATTATAATGCCTCCCTCAGCCCTTGACCGCCTTGCATCGCTCCACATTGATTATCCAATGTTGTTTGAGCTTCGTAATGACACTGCTGAGCGGGTCTCTCATTGTGGGGTGTTGGAGTTCATCGCAGAAGAAGGCATGATCTACATGCCTTATTGGATGATGGAGAATATGCTCTTGCAAGAGGGGGACATTGTGCGACTGAAAAATGTGACTCTTCCAAAGGGAACATATGTTAAACTTCAACCCCATACAAAGGACTTTTTAGACATCTCAAATCCAAAAGCTATCTTGGAGACGACACTAAGGAATTTTTCCTGCTTGACCATTGGGGATAGTATTATGGTAGCATACAACAACAAGAAGTATTATATAGATATCATTGAATCAAAGCCTTCTAATGCAATAAGTATAATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCTCTTGATTACAAGGAACCTGAAAGGCCTGTGGCACCTGTTCCTCTTAACAAGGCAACAGCTCAAGTTGAAGAGGACCCTGCTGCGACTGAACCAAAATTCAACCCTTTTACTGGAGCTGGAAGGCGCTTGGATGGTAAGCCTTTGAAGTATGAGCCAGCACCAGCTTCCTCATCAGGGTCCAAAGACAAGAAACCTGTGGCCACCAATGGAACTGCACCACCTTCTGCAGGATCTAGTTCTCAAACTGCCAATCGTCAGGCTCAGGGAAAGCTTGTTTTTGGAGCAAATGCCAGCCGTATTCCAAAGGAGGCACCAAAGAAGGAAGCTACAAAAGACGCTAAACAAGAGCAGCAACCTGAAAAGAAAGAAGATCCCAAGTTCCAGCCATTTACCGGGAAAAAGTACTCGCTTAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

323

Amino Acids

35.99

Weight (kDa)

6.18

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	13 - 108	6.8e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	109 - 184	7.5e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	2 cut(s)	583, 862
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	3 cut(s)	83, 133, 196
AclWI	GGATC	2 cut(s)	790, 917
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	412, 647
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	956
AfiI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 779, 944
AgsI	TTSAA	7 cut(s)	77, 92, 347, 488, 620, 652, 697
AluBI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 823, 878
AluI	AGCT	7 cut(s)	175, 389, 611, 668, 716, 823, 878
Alw26I	GTCTC	3 cut(s)	205, 392, 515
AlwI	GGATC	2 cut(s)	790, 917
AoxI	GGCC	2 cut(s)	575, 750
ApeKI	GCWGC	2 cut(s)	632, 901
ApoI	RAATTY	2 cut(s)	412, 647
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	625, 729
AsuC2I	CCSGG	1 cut(s)	946
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	625, 729
BalI	TGGCCA	1 cut(s)	752
BanI	GGYRCC	2 cut(s)	583, 862
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	619, 913
BccI	CCATC	3 cut(s)	5, 259, 677
BceAI	ACGGC	1 cut(s)	831
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcnI	CCSGG	1 cut(s)	946
BcoDI	GTCTC	3 cut(s)	205, 392, 515
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	679
BisI	GCNGC	3 cut(s)	83, 633, 902
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	84, 634, 903
BmcAI	AGTACT	1 cut(s)	956
Bme1390I	CCNGG	1 cut(s)	946
Bme18I	GGWCC	2 cut(s)	625, 729
BmgT120I	GGNCC	2 cut(s)	625, 729
BmiI	GGNNCC	5 cut(s)	567, 585, 627, 730, 864
BmrFI	CCNGG	1 cut(s)	946
BmsI	GCATC	2 cut(s)	74, 149
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	3 cut(s)	121, 813, 962
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	946
Bsa29I	ATCGAT	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 779, 944
Bse1I	ACTGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	52
BseGI	GGATG	2 cut(s)	267, 688
BseLI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 779, 944
BseMII	CTCAG	3 cut(s)	135, 183, 827
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	619, 913
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	577, 752
BshNI	GGYRCC	2 cut(s)	583, 862
BshVI	ATCGAT	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	945
BslFI	GGGAC	2 cut(s)	43, 305
BslI	CCNNNNNNNGG	5 cut(s)	358, 662, 726, 779, 944
BsmAI	GTCTC	3 cut(s)	205, 392, 515
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	43, 305
BsnI	GGCC	2 cut(s)	577, 752
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	243, 782, 922
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	83, 133, 196
BspANI	GGCC	2 cut(s)	577, 752
BspCNI	CTCAG	3 cut(s)	134, 184, 826
BspDI	ATCGAT	1 cut(s)	52
BspLI	GGNNCC	5 cut(s)	567, 585, 627, 730, 864
BspMAI	CTGCAG	1 cut(s)	781
BspPI	GGATC	2 cut(s)	790, 917
BspT107I	GGYRCC	2 cut(s)	583, 862
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	667
BssMI	GATC	3 cut(s)	243, 782, 922
BssNI	GRCGYC	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	324, 615
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	708, 844
BstDEI	CTNAG	5 cut(s)	121, 192, 407, 813, 962
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	2 cut(s)	267, 688
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	3 cut(s)	246, 785, 925
BstMAI	GTCTC	3 cut(s)	205, 392, 515
BstMBI	GATC	3 cut(s)	243, 782, 922
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	944
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	2 cut(s)	619, 913
BstX2I	RGATCY	2 cut(s)	782, 922
BstYI	RGATCY	2 cut(s)	782, 922
Bsu15I	ATCGAT	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	577, 752
BsuTUI	ATCGAT	1 cut(s)	52
BtgZI	GCGATG	2 cut(s)	126, 211
BtsCI	GGATG	2 cut(s)	267, 688
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	708, 844
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	625, 729
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	1 cut(s)	896
Csp6I	GTAC	1 cut(s)	955
CviAII	CATG	3 cut(s)	26, 241, 250
CviQI	GTAC	1 cut(s)	955
DdeI	CTNAG	5 cut(s)	121, 192, 407, 813, 962
DpnI	GATC	3 cut(s)	245, 784, 924
DpnII	GATC	3 cut(s)	243, 782, 922
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	324, 615
EarI	CTCTTC	2 cut(s)	324, 615
Eco147I	AGGCCT	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	625, 729
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRV	GATATC	1 cut(s)	481
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	3 cut(s)	29, 244, 253
FaqI	GGGAC	2 cut(s)	43, 305
FatI	CATG	3 cut(s)	25, 240, 249
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	83, 633, 902
FokI	GGATG	2 cut(s)	274, 695
Fsp4HI	GCNGC	3 cut(s)	83, 633, 902
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	3 cut(s)	83, 633, 902
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	2 cut(s)	577, 752
HapII	CCGG	1 cut(s)	945
HgaI	GACGC	1 cut(s)	896
HhaI	GCGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	29, 244, 253
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	316, 488
HpaII	CCGG	1 cut(s)	945
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	5 cut(s)	230, 507, 666, 783, 865
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	7 cut(s)	65, 140, 283, 506, 545, 767, 779
HpyF3I	CTNAG	5 cut(s)	121, 192, 407, 813, 962
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	29, 244, 253
HspAI	GCGC	1 cut(s)	676
Kzo9I	GATC	3 cut(s)	243, 782, 922
LmnI	GCTCC	3 cut(s)	150, 665, 833
Lsp1109I	GCAGC	2 cut(s)	619, 913
LweI	GCATC	2 cut(s)	74, 149
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	245, 784, 924
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	3 cut(s)	243, 782, 922
MboII	GAAGA	4 cut(s)	245, 311, 632, 932
MflI	RGATCY	2 cut(s)	782, 922
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	4 cut(s)	105, 412, 516, 647
MluNI	TGGCCA	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	2 cut(s)	339, 597
MslI	CAYNNNNRTG	1 cut(s)	52
Msp20I	TGGCCA	1 cut(s)	752
MspI	CCGG	1 cut(s)	945
MspR9I	CCNGG	1 cut(s)	946
NciI	CCSGG	1 cut(s)	946
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	243, 782, 922
NlaIII	CATG	3 cut(s)	29, 244, 253
NlaIV	GGNNCC	5 cut(s)	567, 585, 627, 730, 864
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	84, 634, 903
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	625
PsiI	TTATAA	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	625
PspN4I	GGNNCC	5 cut(s)	567, 585, 627, 730, 864
PspPI	GGNCC	2 cut(s)	625, 729
PspPPI	RGGWCCY	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	782, 922
RsaI	GTAC	1 cut(s)	956
RsaNI	GTAC	1 cut(s)	955
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	339, 597
SatI	GCNGC	3 cut(s)	83, 633, 902
Sau3AI	GATC	3 cut(s)	243, 782, 922
Sau96I	GGNCC	2 cut(s)	625, 729
ScaI	AGTACT	1 cut(s)	956
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	946
SfaNI	GCATC	2 cut(s)	74, 149
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	2 cut(s)	625, 729
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	105, 412, 516, 647
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	3 cut(s)	83, 133, 196
SspMI	CTAG	1 cut(s)	786
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	1 cut(s)	944
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	39, 52
TasI	AATT	4 cut(s)	105, 412, 516, 647
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	339, 597
Tru9I	TTAA	2 cut(s)	339, 597
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	632, 901
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	625, 729
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	2 cut(s)	412, 647
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	786
ZraI	GACGTC	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.