Rh2BG251500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003073
Physical Location & Seq
Forward (+)
25899813 .. 25900913
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG251500.1

Sequence Viewer

Length: 348 bp
ATGTTTGGTTGGATCTACAGAGGTGTACTCGTGGGTGGAGCGAATGGCGGCGCTTGGTGGCTGCAGCTGTCCAGGGCTGTAACGTCTAATTCGTGTTGGAGAGCTGATGGATCTGTTCGAATGGATTGCAAGAGGATGGTTTTTTCGTTCGATGGTGGCACTCTTTGGCGTGGCTGGGATCGGTCGTTCCTGTTGAAGGACAACGGGATCGGTGGTGCTCTTGACTCTCTTTCGCCGGCAGTGGTTGCTGGACTGGAAGTGGGTTTCGAGTTTGGTGGTGGGTTTTGTTATCGTCTACAGGATGATGCTATCAGTGAGGGTGGTCGTGCAGGCATCAAATTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.47

Weight (kDa)

7.7

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AciI CCGC 1 cut(s) 48
AclWI GGATC 4 cut(s) 20, 118, 186, 215
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 67, 104
AluI AGCT 2 cut(s) 67, 104
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 4 cut(s) 20, 118, 186, 215
ApeKI GCWGC 2 cut(s) 61, 64
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 118
BauI CACGAG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 48, 76
BccI CCATC 3 cut(s) 101, 130, 146
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 1 cut(s) 73
BfmI CTRYAG 3 cut(s) 16, 62, 296
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 3 cut(s) 49, 62, 65
BlsI GCNGC 3 cut(s) 50, 63, 66
Bme1390I CCNGG 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 295, 342
BplI GAGNNNNNCTC 2 cut(s) 12, 44
Bpu14I TTCGAA 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 258, 343
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 141, 307
BseLI CCNNNNNNNGG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 258, 343
BseXI GCAGC 2 cut(s) 48, 76
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 348
Bsh1285I CGRYCG 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 12, 110, 178, 207
BspACI CCGC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 4 cut(s) 20, 118, 186, 215
BspT104I TTCGAA 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 258, 343
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 12, 110, 178, 207
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 237, 331
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 141, 307
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 15, 113, 181, 210
BstMBI GATC 4 cut(s) 12, 110, 178, 207
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 3 cut(s) 16, 62, 296
BstV1I GCAGC 2 cut(s) 48, 76
BstX2I RGATCY 2 cut(s) 12, 110
BstYI RGATCY 2 cut(s) 12, 110
BtsCI GGATG 2 cut(s) 141, 307
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 319
Cac8I GCNNGC 2 cut(s) 237, 331
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 235
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 5 cut(s) 61, 67, 77, 104, 174
CviKI_1 RGCY 5 cut(s) 61, 67, 77, 104, 174
CviQI GTAC 1 cut(s) 26
DpnI GATC 4 cut(s) 14, 112, 180, 209
DpnII GATC 4 cut(s) 12, 110, 178, 207
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 71
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 49, 62, 65
FokI GGATG 2 cut(s) 148, 314
Fsp4HI GCNGC 3 cut(s) 49, 62, 65
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 49, 62, 65
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 54
HapII CCGG 1 cut(s) 236
HhaI GCGC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 26, 296
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 26, 296
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 64, 129, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 83
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Kzo9I GATC 4 cut(s) 12, 110, 178, 207
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 9 cut(s) 58, 85, 160, 203, 234, 239, 249, 284, 315
Lsp1109I GCAGC 2 cut(s) 48, 76
LweI GCATC 2 cut(s) 295, 342
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 14, 112, 180, 209
MboI GATC 4 cut(s) 12, 110, 178, 207
MflI RGATCY 2 cut(s) 12, 110
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 88, 338
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 14, 126, 310
MroNI GCCGGC 1 cut(s) 235
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 237
NdeII GATC 4 cut(s) 12, 110, 178, 207
NgoMIV GCCGGC 1 cut(s) 235
NspV TTCGAA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 50, 63, 66
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 71
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 2 cut(s) 12, 110
PvuII CAGCTG 1 cut(s) 67
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SatI GCNGC 3 cut(s) 49, 62, 65
Sau3AI GATC 4 cut(s) 12, 110, 178, 207
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 220
SetI ASST 4 cut(s) 25, 69, 86, 106
SfaNI GCATC 2 cut(s) 295, 342
SfcI CTRYAG 3 cut(s) 16, 62, 296
SfuI TTCGAA 1 cut(s) 118
Sse9I AATT 2 cut(s) 88, 338
SsiI CCGC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 71
TaiI ACGT 1 cut(s) 86
TaqI TCGA 3 cut(s) 118, 150, 267
TaqII GACCGA 1 cut(s) 171
TasI AATT 2 cut(s) 88, 338
TatI WGTACW 1 cut(s) 25
TauI GCSGC 1 cut(s) 51
TscAI CASTG 2 cut(s) 246, 319
TseI GCWGC 2 cut(s) 61, 64
TspRI CASTG 2 cut(s) 246, 319
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.