Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

9143784 .. 9144224

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGCCTCCGGGGCCGCCGCTGATTCCTTTGGAGGAGCGCCTGCTGGCGAAGCTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGGTCTTGATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACTGTGAAAGTTTTCAGTTGTCAAATTGCTGCATTTGCATGTAATGTGATATTCTTGATGTTGGGGGCGGTAACTGTGGTCGGAGCCGAGCTCGCGTTCGAGGCCGAAATCGGAATTCATTTTGGGGTGAGTGGTTGGTGGTTGGTGGCTAGTGGCGGAGCTTGCTTCGGAGGTGCGGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.95

Weight (kDa)

5.72

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	8 cut(s)	17, 20, 76, 105, 224, 312, 332, 335
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	59
AluBI	AGCT	3 cut(s)	55, 247, 317
AluI	AGCT	3 cut(s)	55, 247, 317
Alw21I	GWGCWC	1 cut(s)	249
AoxI	GGCC	3 cut(s)	14, 109, 258
ApeKI	GCWGC	2 cut(s)	142, 185
ApoI	RAATTY	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	129, 172
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	5 cut(s)	17, 20, 143, 186, 333
BlsI	GCNGC	5 cut(s)	18, 21, 144, 187, 334
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	6, 15, 241
BmrFI	CCNGG	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpuMI	CCSGG	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	11, 112
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	11, 112
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	129, 172
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	16, 111, 260
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	11, 139
BsnI	GGCC	3 cut(s)	16, 111, 260
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	8 cut(s)	17, 20, 76, 105, 224, 312, 332, 335
BspANI	GGCC	3 cut(s)	16, 111, 260
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	3 cut(s)	6, 15, 241
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	11, 112
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	92, 160, 232
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	6 cut(s)	44, 48, 57, 140, 249, 319
BstDSI	CCRYGG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 191, 248, 257, 318
BstNSI	RCATGY	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	129, 172
BsuRI	GGCC	3 cut(s)	16, 111, 260
BtgI	CCRYGG	1 cut(s)	112
Cac8I	GCNNGC	6 cut(s)	44, 48, 57, 140, 249, 319
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	48
CviAII	CATG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	2 cut(s)	91, 327
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	198
FaiI	YATR	1 cut(s)	196
FatI	CATG	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	17, 20, 143, 186, 333
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	17, 20, 143, 186, 333
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	5 cut(s)	17, 20, 143, 186, 333
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	16, 111, 260
HapII	CCGG	2 cut(s)	11, 139
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	25, 65
HpaII	CCGG	2 cut(s)	11, 139
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	64, 150, 239, 269, 326
Hpy188III	TCNNGA	2 cut(s)	95, 211
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	92, 160, 232
HpyCH4V	TGCA	2 cut(s)	188, 194
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 191, 248, 257, 318
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	198
HspAI	GCGC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	4, 37, 239, 314
LpnPI	CCDG	5 cut(s)	24, 32, 41, 56, 152
Lsp1109I	GCAGC	2 cut(s)	129, 172
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	180, 270
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	42, 217
MnlI	CCTC	5 cut(s)	18, 28, 156, 250, 320
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	2 cut(s)	11, 139
MspR9I	CCNGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 191, 248, 257, 318
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	198
NlaIV	GGNNCC	3 cut(s)	6, 15, 241
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	18, 21, 144, 187, 334
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	6, 15, 241
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	5 cut(s)	17, 20, 143, 186, 333
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	4 cut(s)	57, 249, 319, 331
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	180, 270
SsiI	CCGC	8 cut(s)	17, 20, 76, 105, 224, 312, 332, 335
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	92, 160, 232
TaqI	TCGA	3 cut(s)	86, 123, 255
TasI	AATT	2 cut(s)	180, 270
TauI	GCSGC	3 cut(s)	19, 22, 335
TfiI	GAWTC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	142, 185
TspDTI	ATGAA	2 cut(s)	109, 263
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.