Rh2AG675700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003073
Physical Location & Seq
Reverse (-)
88754805 .. 88755262
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG675700.1

Sequence Viewer

Length: 339 bp
ATGGAGCCTCTGGGGCCGCCGCTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTCAGAGTCGCGGTGGCGGAAGTGGTCGAACGACCTTGATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCGCTGGCTGCCTCTGATATTGACCGTGAAAGTTTTCAGAAGTTGTCAAATTGCTGCATTTGCATATAATGTGAGATTCTTGATGTTGGGGGCGATAACTGTGGTCGGGGTCGAGCTCACGTTTGAGGCCGAAATCAGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCGGAGCTTGCTTCAGAGGTTGCGGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.46

Weight (kDa)

5.79

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AccII CGCG 1 cut(s) 70
AciI CCGC 8 cut(s) 17, 20, 40, 70, 76, 105, 308, 329
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 59
AluBI AGCT 3 cut(s) 55, 250, 313
AluI AGCT 3 cut(s) 55, 250, 313
Alw21I GWGCWC 1 cut(s) 252
AoxI GGCC 3 cut(s) 14, 109, 261
ApeKI GCWGC 3 cut(s) 43, 142, 188
ApoI RAATTY 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 298
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 30, 129, 175
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 7 cut(s) 17, 20, 41, 44, 143, 189, 330
BlsI GCNGC 7 cut(s) 18, 21, 42, 45, 144, 190, 331
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 6, 15
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 30, 129, 175
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 16, 111, 263
BsiHKAI GWGCWC 1 cut(s) 252
BsnI GGCC 3 cut(s) 16, 111, 263
Bsp1286I GDGCHC 1 cut(s) 252
BspACI CCGC 8 cut(s) 17, 20, 40, 70, 76, 105, 308, 329
BspANI GGCC 3 cut(s) 16, 111, 263
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 6, 15
BsrBI CCGCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 160, 235
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 48, 57, 140, 315
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 6 cut(s) 13, 52, 56, 135, 194, 314
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 30, 129, 175
BsuRI GGCC 3 cut(s) 16, 111, 263
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 48, 57, 140, 315
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 109
EciI GGCGGA 2 cut(s) 91, 323
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 252
FaiI YATR 2 cut(s) 199, 201
Fnu4HI GCNGC 7 cut(s) 17, 20, 41, 44, 143, 189, 330
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 7 cut(s) 17, 20, 41, 44, 143, 189, 330
GluI GCNGC 7 cut(s) 17, 20, 41, 44, 143, 189, 330
HaeIII GGCC 3 cut(s) 16, 111, 263
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
HinfI GANTC 3 cut(s) 25, 65, 210
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 5 cut(s) 64, 150, 173, 272, 322
Hpy188III TCNNGA 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 160, 235
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 191, 197
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 52, 56, 135, 194, 314
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 1 cut(s) 59
LmnI GCTCC 3 cut(s) 4, 37, 310
LpnPI CCDG 4 cut(s) 32, 41, 124, 287
Lsp1109I GCAGC 3 cut(s) 30, 129, 175
MaeII ACGT 1 cut(s) 254
MbiI CCGCTC 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 183, 273
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 18, 28, 156, 253, 316
MroXI GAANNNNTTC 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 22
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 6 cut(s) 13, 52, 56, 135, 194, 314
NlaIV GGNNCC 2 cut(s) 6, 15
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 25, 210
PkrI GCNGC 7 cut(s) 18, 21, 42, 45, 144, 190, 331
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 6, 15
PspPI GGNCC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 252
SatI GCNGC 7 cut(s) 17, 20, 41, 44, 143, 189, 330
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 252
SetI ASST 6 cut(s) 57, 96, 252, 257, 315, 327
Sse9I AATT 2 cut(s) 183, 273
SsiI CCGC 8 cut(s) 17, 20, 40, 70, 76, 105, 308, 329
SstI GAGCTC 1 cut(s) 252
TaaI ACNGT 2 cut(s) 160, 235
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 86, 123, 246
TasI AATT 2 cut(s) 183, 273
TauI GCSGC 4 cut(s) 19, 22, 43, 332
TfiI GAWTC 2 cut(s) 25, 210
TseI GCWGC 3 cut(s) 43, 142, 188
TspDTI ATGAA 2 cut(s) 109, 266
TspGWI ACGGA 1 cut(s) 18
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.