Rh2BG139500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003073
Physical Location & Seq
Forward (+)
11923256 .. 11923543
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG139500.1

Sequence Viewer

Length: 288 bp
ATGACTCTCGAAAGAGAGCTTTCTCCTCCGCTTCCTCTCTTTGCTGGTGGAGGCAGTGTACTTTCGATCTGGAAGGATGGCTTTGCCTCCTTCTATGGTCCAAACTGTGGTGGTGAAGACGGGCTCCTCCGTCGAAATCTGCCTAAATCTCTCTCTCAAGCTTCTGATGGCAGAAGTGATGGTGATCTAGTGTTTGACTGGCTCTACAGAGGTGTGCTCGTGGGGGAAACGAATGGCGGCGCTTGGTGTCTACAGCAGTCCTGGGCTGTAGCGTCTAGATCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.23

Weight (kDa)

5.15

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AccI GTMKAC 1 cut(s) 250
AciI CCGC 2 cut(s) 29, 237
AclWI GGATC 1 cut(s) 273
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 107
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 19, 161
AluI AGCT 2 cut(s) 19, 161
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 125, 194
AvaII GGWCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 3 cut(s) 71, 161, 173
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 2 cut(s) 188, 276
BfmI CTRYAG 3 cut(s) 205, 251, 267
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpuEI CTTGAG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 15, 116
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 126, 219
Bsp143I GATC 3 cut(s) 66, 184, 278
BspACI CCGC 2 cut(s) 29, 237
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 66, 184, 278
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 107
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 3 cut(s) 69, 187, 281
BstMBI GATC 3 cut(s) 66, 184, 278
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 3 cut(s) 205, 251, 267
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 59
CviJI RGCY 6 cut(s) 19, 81, 124, 161, 202, 266
CviKI_1 RGCY 6 cut(s) 19, 81, 124, 161, 202, 266
CviQI GTAC 1 cut(s) 59
DpnI GATC 3 cut(s) 68, 186, 280
DpnII GATC 3 cut(s) 66, 184, 278
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 126
FaiI YATR 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 188, 276
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 243
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 242
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 4
HphI GGTGA 2 cut(s) 125, 194
Hpy166II GTNNAC 2 cut(s) 59, 251
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 8, 70, 276
Hpy8I GTNNAC 2 cut(s) 59, 251
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 67, 100
HpyCH4III ACNGT 1 cut(s) 107
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 66, 184, 278
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 30, 55, 184, 247, 274
MaeI CTAG 2 cut(s) 188, 276
MalI GATC 3 cut(s) 68, 186, 280
MboI GATC 3 cut(s) 66, 184, 278
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 126, 219
MnlI CCTC 6 cut(s) 36, 44, 45, 97, 137, 203
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
NdeII GATC 3 cut(s) 66, 184, 278
NlaIV GGNNCC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 3 cut(s) 66, 184, 278
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 126, 219
SetI ASST 3 cut(s) 21, 163, 214
SfcI CTRYAG 3 cut(s) 205, 251, 267
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SsiI CCGC 2 cut(s) 29, 237
SspMI CTAG 2 cut(s) 188, 276
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 9, 65, 133
TatI WGTACW 1 cut(s) 58
TauI GCSGC 1 cut(s) 240
TscAI CASTG 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 2 cut(s) 188, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.