Rroxscaffold_4G00298360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003073
Physical Location & Seq
Reverse (-)
18227612 .. 18229131
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298360.1

Sequence Viewer

Length: 336 bp
ATGGTTGCTTTGGTAGAGGTCGAAGTTGGTAGGGGCGGTCTTTGTAGAGGTCGAAGTTGGAGATGGAGCCTCCGGGCGGTTGCTGATTCCGTTGGAGGAGCAGCTGCTGGTGAAGCTGGCATCGAGTCGCAGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGATGGCCATGGGTTCATCGACCATTGCCTCGATATTGACCGTGAAAGTTTTCGGTGGGATTCCAATTTTGGGAGTGGAGATAGGAGATTGAAATTTGGATTAGAAGTTGAAATGTTTGTTCTTGTTTTCAGACATTGTTTGGTCTTGTTTTCTCAATTTGAATTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.44

Weight (kDa)

5.32

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 77, 136
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 76, 234
AgsI TTSAA 3 cut(s) 256, 275, 326
AluBI AGCT 2 cut(s) 104, 116
AluI AGCT 2 cut(s) 104, 116
AlwNI CAGNNNCTG 1 cut(s) 107
AoxI GGCC 2 cut(s) 151, 169
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 122
BalI TGGCCA 1 cut(s) 171
BbvI GCAGC 2 cut(s) 91, 113
BccI CCATC 3 cut(s) 57, 152, 161
BceAI ACGGC 1 cut(s) 166
BcnI CCSGG 1 cut(s) 74
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 234
Bse3DI GCAATG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 76, 234
BseMI GCAATG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 91, 113
BshFI GGCC 2 cut(s) 153, 171
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 76, 234
BsnI GGCC 2 cut(s) 153, 171
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 3 cut(s) 36, 77, 136
BspANI GGCC 2 cut(s) 153, 171
BspLI GGNNCC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 91, 113
BsuRI GGCC 2 cut(s) 153, 171
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 107
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 69, 104, 116, 153, 171
CviKI_1 RGCY 5 cut(s) 69, 104, 116, 153, 171
EaeI YGGCCR 1 cut(s) 169
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 176
FaiI YATR 1 cut(s) 174
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 102, 105
Fsp4HI GCNGC 2 cut(s) 102, 105
GluI GCNGC 2 cut(s) 102, 105
HaeIII GGCC 2 cut(s) 153, 171
HapII CCGG 1 cut(s) 73
Hin1II CATG 1 cut(s) 176
HinfI GANTC 3 cut(s) 86, 125, 224
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 176
LmnI GCTCC 2 cut(s) 66, 98
LpnPI CCDG 3 cut(s) 86, 93, 102
Lsp1109I GCAGC 2 cut(s) 91, 113
LweI GCATC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 4 cut(s) 229, 257, 320, 326
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 38, 73
MnlI CCTC 5 cut(s) 10, 41, 80, 89, 203
Mox20I TGGCCA 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 1 cut(s) 171
MseI TTAA 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 172
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 86, 224
PkrI GCNGC 2 cut(s) 103, 106
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 2 cut(s) 102, 105
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 74
SetI ASST 4 cut(s) 21, 52, 106, 118
SfaNI GCATC 1 cut(s) 129
Sse9I AATT 4 cut(s) 229, 257, 320, 326
SsiI CCGC 3 cut(s) 36, 77, 136
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 6 cut(s) 21, 52, 123, 146, 183, 195
TasI AATT 4 cut(s) 229, 257, 320, 326
TfiI GAWTC 2 cut(s) 86, 224
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 1 cut(s) 137
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 137
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.