RchiOBHm_Chr1g0314121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003073
Physical Location & Seq
Forward (+)
1403971 .. 1405841
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54480

Sequence Viewer

Length: 378 bp
ATGCCTCTCGAGAGAGAGCTCTCTCCTCCGGCTCCTCTCTTCACTGGTGGAGGCAGTGTACTTTCGATCTGGAAGGATGGAGTTGCCTCCTTCTATGGTCCAATCTGTGGTGGTGAAGACGGGCCTCTCCGTCGAAACCTGCCTAAAGTTCTCTTTCAAGCTGCTGATGGCGGAATTGACGAGGATCTGATGTTTGGTCGGATCTACAGAGGTGTACTAGTGGGTGAAGCGAATGGCGGTGCTTGGTGGTTGCAGTTGTCCAGGGCTGTAACGTCTGTCAAAGGGATTAAATCTCTTCTGAGTAAGAAAGGCATGTGTGTGACACGCAGGCAAGGACAAAATCTGGATTGTAAAAAAAGGTGGGTTGAATCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.58

Weight (kDa)

9.37

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 2 cut(s) 171, 237
AclWI GGATC 2 cut(s) 192, 209
AfaI GTAC 2 cut(s) 60, 216
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 158, 368
AhlI ACTAGT 1 cut(s) 217
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 19, 161
AluI AGCT 2 cut(s) 19, 161
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 2 cut(s) 192, 209
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 98, 122
AsuHPI GGTGA 2 cut(s) 125, 236
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 71, 161
BciT130I CCWGG 1 cut(s) 262
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 98, 122
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 15, 24
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 66, 184, 201
BspACI CCGC 2 cut(s) 171, 237
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 192, 209
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 66, 184, 201
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 44, 300
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 69, 187, 204
BstMBI GATC 3 cut(s) 66, 184, 201
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 184, 201
BstYI RGATCY 2 cut(s) 184, 201
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 42, 61
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 98, 122
Csp6I GTAC 2 cut(s) 59, 215
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 19, 32, 124, 161, 266
CviKI_1 RGCY 5 cut(s) 19, 32, 124, 161, 266
CviQI GTAC 2 cut(s) 59, 215
DdeI CTNAG 1 cut(s) 299
DpnI GATC 3 cut(s) 68, 186, 203
DpnII GATC 3 cut(s) 66, 184, 201
Eam1104I CTCTTC 2 cut(s) 44, 300
EarI CTCTTC 2 cut(s) 44, 300
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 96, 314
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 316
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 125, 236
Hpy166II GTNNAC 2 cut(s) 59, 215
Hpy188I TCNGA 3 cut(s) 189, 201, 300
Hpy188III TCNNGA 4 cut(s) 8, 10, 70, 344
Hpy8I GTNNAC 2 cut(s) 59, 215
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 67, 100
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 66, 184, 201
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 8 cut(s) 30, 42, 55, 152, 247, 274, 313, 329
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 268, 319
MalI GATC 3 cut(s) 68, 186, 203
MboI GATC 3 cut(s) 66, 184, 201
MboII GAAGA 3 cut(s) 31, 128, 287
MflI RGATCY 2 cut(s) 184, 201
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 8 cut(s) 15, 36, 44, 45, 97, 135, 175, 203
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
NdeII GATC 3 cut(s) 66, 184, 201
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 8
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 98, 122
PsuI RGATCY 2 cut(s) 184, 201
RsaI GTAC 2 cut(s) 60, 216
RsaNI GTAC 2 cut(s) 59, 215
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 66, 184, 201
Sau96I GGNCC 2 cut(s) 98, 122
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 21, 141, 163, 214, 275, 362
SfcI CTRYAG 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 1 cut(s) 174
SsiI CCGC 2 cut(s) 171, 237
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 9, 65, 133
TasI AATT 1 cut(s) 174
TatI WGTACW 2 cut(s) 58, 214
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 49, 61
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 49, 61
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 8
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.