Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

78901332 .. 78902496

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTCTCAAAAAGAGAGTTCTCCCCTCCGCCTCCTTTCTCTGCTCTGCTGGTGGAGGCCGTGTACTTACGATCTGGATGGATGGCTTTGCCTCCTTCTCTGGTCTAAACTGTGGTGGTAAAGACAGGGCTGCCCATAGAAGCCTACCTAATTTTCTCTCTCAAGCTTCTGATGGGGGAGGTAAAGGTGTTCTGGTGTTTGACCGGATCTACAGAGGTATGGTTGTGGGTGACACGAATGGCAGCGCTTGGTGTCTGAGGCCGTTGGAGATACTGGGTTTTCCGTTTGATGGTGGCTCTCTCTGGCATGGCTGGGATCGGTCGATTCTTATGGAGGACAAAGGGACCGGTGGTGTTCTTGATTTTACTTTGCCGGCAGAGGATGTCGGGCTAGAATTGGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.38

Weight (kDa)

6.06

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	215, 324
AfaI	GTAC	1 cut(s)	66
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgeI	ACCGGT	1 cut(s)	347
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	2 cut(s)	215, 324
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	2 cut(s)	58, 260
ApeKI	GCWGC	2 cut(s)	131, 243
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	118, 255
BccI	CCATC	4 cut(s)	73, 77, 167, 284
BceAI	ACGGC	2 cut(s)	45, 247
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	2 cut(s)	132, 244
BlsI	GCNGC	2 cut(s)	133, 245
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	204, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	2 cut(s)	347, 373
Bse1I	ACTGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	84, 88, 388
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	118, 255
BseYI	CCCAGC	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	60, 262
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	205, 348, 374
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	60, 262
Bsp143I	GATC	3 cut(s)	72, 207, 316
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	60, 262
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	2 cut(s)	215, 324
BsrFI	RCCGGY	2 cut(s)	347, 373
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	2 cut(s)	347, 373
BssMI	GATC	3 cut(s)	72, 207, 316
Bst4CI	ACNGT	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	84, 88, 388
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	75, 210, 319
BstMBI	GATC	3 cut(s)	72, 207, 316
BstMCI	CGRYCG	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	118, 255
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	60, 262
BtsCI	GGATG	3 cut(s)	84, 88, 388
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	2 cut(s)	347, 373
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	9 cut(s)	60, 87, 131, 144, 167, 262, 297, 312, 391
CviKI_1	RGCY	9 cut(s)	60, 87, 131, 144, 167, 262, 297, 312, 391
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	3 cut(s)	74, 209, 318
DpnII	GATC	3 cut(s)	72, 207, 316
EciI	GGCGGA	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	247
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	138, 221, 309, 332
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	132, 244
FokI	GGATG	3 cut(s)	91, 95, 395
Fsp4HI	GCNGC	2 cut(s)	132, 244
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	132, 244
GsaI	CCCAGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	60, 262
HapII	CCGG	3 cut(s)	205, 348, 374
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	3 cut(s)	205, 348, 374
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	172, 258
Hpy188III	TCNNGA	2 cut(s)	76, 359
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	72, 207, 316
Lsp1109I	GCAGC	2 cut(s)	118, 255
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	74, 209, 318
MboI	GATC	3 cut(s)	72, 207, 316
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	2 cut(s)	151, 395
MmeI	TCCRAC	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	1 cut(s)	406
MspI	CCGG	3 cut(s)	205, 348, 374
NaeI	GCCGGC	1 cut(s)	375
NdeII	GATC	3 cut(s)	72, 207, 316
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	133, 245
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	2 cut(s)	132, 244
Sau3AI	GATC	3 cut(s)	72, 207, 316
Sau96I	GGNCC	1 cut(s)	345
SetI	ASST	5 cut(s)	151, 169, 184, 190, 220
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	151, 395
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	323
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	151, 395
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	131, 243
Tsp45I	GTSAC	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	345
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.