Rh6BG336400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003073
Physical Location & Seq
Reverse (-)
56986589 .. 56987022
434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG336400.1

Sequence Viewer

Length: 288 bp
ATGGAGCCTCCGGGGCCGCCGCTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGGTGGTCATGGGTTCATCGACTGCTTGGGTCGTCGGCTGCCTCTGATATTGACGGTGAAAGTTTTCAGGGGCGGTAACTGTGGTCGGGGGCGAGCTCGCGTTCGAGGCCGAAATCAGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCGGAGCTTGCTTCGGAGGTGGGGCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.23

Weight (kDa)

10.28

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AccII CGCG 1 cut(s) 204
AciI CCGC 8 cut(s) 17, 20, 40, 76, 105, 177, 258, 281
AcsI RAATTY 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 59
AluBI AGCT 3 cut(s) 55, 200, 263
AluI AGCT 3 cut(s) 55, 200, 263
Alw21I GWGCWC 1 cut(s) 202
AoxI GGCC 3 cut(s) 14, 91, 211
ApeKI GCWGC 2 cut(s) 43, 142
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 172, 248
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 30, 129
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 106
BcnI CCSGG 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 5 cut(s) 17, 20, 41, 44, 143
BlsI GCNGC 5 cut(s) 18, 21, 42, 45, 144
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 6, 15
BmrFI CCNGG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
BseDI CCNNGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 30, 129
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 16, 93, 213
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 11
BsnI GGCC 3 cut(s) 16, 93, 213
Bsp1286I GDGCHC 1 cut(s) 202
BspACI CCGC 8 cut(s) 17, 20, 40, 76, 105, 177, 258, 281
BspANI GGCC 3 cut(s) 16, 93, 213
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 6, 15
BsrBI CCGCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 160, 185
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 5 cut(s) 48, 57, 198, 202, 265
BstFNI CGCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 5 cut(s) 13, 52, 56, 210, 264
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 30, 129
BsuRI GGCC 3 cut(s) 16, 93, 213
Cac8I GCNNGC 5 cut(s) 48, 57, 198, 202, 265
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 48
CviAII CATG 1 cut(s) 113
EciI GGCGGA 2 cut(s) 91, 273
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 5 cut(s) 17, 20, 41, 44, 143
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 5 cut(s) 17, 20, 41, 44, 143
GluI GCNGC 5 cut(s) 17, 20, 41, 44, 143
HaeIII GGCC 3 cut(s) 16, 93, 213
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 116
HinfI GANTC 2 cut(s) 25, 65
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 172, 248
Hpy188I TCNGA 4 cut(s) 64, 150, 222, 272
Hpy99I CGWCG 2 cut(s) 64, 141
HpyCH4III ACNGT 2 cut(s) 160, 185
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 52, 56, 210, 264
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 116
LmnI GCTCC 3 cut(s) 4, 37, 260
LpnPI CCDG 5 cut(s) 24, 32, 41, 157, 237
Lsp1109I GCAGC 2 cut(s) 30, 129
MaeIII GTNAC 1 cut(s) 179
MbiI CCGCTC 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 223
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 2 cut(s) 12, 42
MnlI CCTC 5 cut(s) 18, 28, 156, 203, 266
MroXI GAANNNNTTC 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 5 cut(s) 13, 52, 56, 210, 264
NciI CCSGG 1 cut(s) 12
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 6, 15
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 5 cut(s) 18, 21, 42, 45, 144
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 6, 15
PspPI GGNCC 1 cut(s) 14
SacI GAGCTC 1 cut(s) 202
SatI GCNGC 5 cut(s) 17, 20, 41, 44, 143
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 57, 202, 265, 277
Sse9I AATT 1 cut(s) 223
SsiI CCGC 8 cut(s) 17, 20, 40, 76, 105, 177, 258, 281
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 160, 185
TaqI TCGA 3 cut(s) 86, 123, 208
TasI AATT 1 cut(s) 223
TauI GCSGC 3 cut(s) 19, 22, 43
TfiI GAWTC 1 cut(s) 25
TseI GCWGC 2 cut(s) 43, 142
TspDTI ATGAA 2 cut(s) 109, 216
TspGWI ACGGA 1 cut(s) 18
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.