Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

11203026 .. 11203463

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGCCTCCGGGGCCGCCACTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTTGGAGTCGTGGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGGTGGCTGTGGGGTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACAGTGAAAGTTTTCAGAAGTTGTCAAATTGCTGCATTTGCATGTAATGTGATATTCTTGATGTTGGGGGTGGTAACTGTGGTCGGGGCCGAGCTCGGGTTCGAGGCCGAAATCGGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCAGAGCTTGCTTCGGAGGTGCGTCGGTTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.34

Weight (kDa)

5.78

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	4 cut(s)	17, 40, 76, 105
AcsI	RAATTY	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	55, 250, 313
AluI	AGCT	3 cut(s)	55, 250, 313
Alw21I	GWGCWC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	14, 91, 243, 261
ApeKI	GCWGC	3 cut(s)	43, 142, 188
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	14, 243
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	30, 129, 175
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	5 cut(s)	17, 41, 44, 143, 189
BlsI	GCNGC	5 cut(s)	18, 42, 45, 144, 190
Bme1390I	CCNGG	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	14, 243
BmiI	GGNNCC	3 cut(s)	6, 15, 244
BmrFI	CCNGG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	30, 129, 175
BshFI	GGCC	4 cut(s)	16, 93, 245, 263
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	11, 139
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	4 cut(s)	16, 93, 245, 263
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	252
BspACI	CCGC	4 cut(s)	17, 40, 76, 105
BspANI	GGCC	4 cut(s)	16, 93, 245, 263
BspLI	GGNNCC	3 cut(s)	6, 15, 244
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	160, 235
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	48, 57, 140, 315
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 52, 56, 135, 194, 314
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	30, 129, 175
BsuRI	GGCC	4 cut(s)	16, 93, 245, 263
BtsIMutI	CAGTG	2 cut(s)	20, 165
Cac8I	GCNNGC	4 cut(s)	48, 57, 140, 315
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	14, 243
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	5 cut(s)	17, 41, 44, 143, 189
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	17, 41, 44, 143, 189
GluI	GCNGC	5 cut(s)	17, 41, 44, 143, 189
HaeIII	GGCC	4 cut(s)	16, 93, 245, 263
HapII	CCGG	2 cut(s)	11, 139
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	2 cut(s)	25, 65
HpaII	CCGG	2 cut(s)	11, 139
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	150, 173, 272, 322
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	160, 235
HpyCH4V	TGCA	2 cut(s)	191, 197
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 52, 56, 135, 194, 314
Hsp92II	CATG	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	4, 37
LpnPI	CCDG	5 cut(s)	24, 32, 41, 152, 287
Lsp1109I	GCAGC	3 cut(s)	30, 129, 175
MaeIII	GTNAC	1 cut(s)	229
MbiI	CCGCTC	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	183, 273
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	12, 42
MnlI	CCTC	5 cut(s)	18, 28, 156, 253, 316
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	2 cut(s)	11, 139
MspR9I	CCNGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	6 cut(s)	13, 52, 56, 135, 194, 314
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	3 cut(s)	6, 15, 244
NmeAIII	GCCGAG	1 cut(s)	271
NspI	RCATGY	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	18, 42, 45, 144, 190
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	6, 15, 244
PspPI	GGNCC	2 cut(s)	14, 243
RseI	CAYNNNNRTG	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	252
SatI	GCNGC	5 cut(s)	17, 41, 44, 143, 189
Sau96I	GGNCC	2 cut(s)	14, 243
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	4 cut(s)	57, 252, 315, 327
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	183, 273
SsiI	CCGC	4 cut(s)	17, 40, 76, 105
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	160, 235
TaqI	TCGA	3 cut(s)	86, 123, 258
TasI	AATT	2 cut(s)	183, 273
TauI	GCSGC	2 cut(s)	19, 43
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	2 cut(s)	27, 165
TseI	GCWGC	3 cut(s)	43, 142, 188
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	27, 165
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.