Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Reverse (-)

33010492 .. 33010833

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGACCGCGAGGGAGGGCATCGGTGTCAAGGCCTTCATGCATGGTGATGGAGTTCTTTGGTGGGCTGGGCCGGGATCACTGAATTCTAAGGAAGATGAAGGGATCGGTGACGATCCAAATTTCTCTTTGGTGGCGGGGATTGATGTCGGGATAGAATTTGGTTTTGAGGTTGGTGGTGGAGCTCGCTCTCCTTTGCCGGAATTGGATCCGTCTCTATCCCGGGTGGGTGTTGGTATCTATGGCAGCCTTCGGTGGGTGCTACAAGTGGTGGTGGAAGCGCGGGCGGTGTCTTCCCGCAAATGGTGGATGGCGGCGGGGCATGATTGCCTTCTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.02

Weight (kDa)

5.02

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	11, 283
AciI	CCGC	7 cut(s)	9, 137, 283, 287, 298, 314, 317
AclWI	GGATC	5 cut(s)	85, 110, 113, 203, 216
AcsI	RAATTY	3 cut(s)	85, 121, 158
AfiI	CCNNNNNNNGG	2 cut(s)	256, 303
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	5 cut(s)	85, 110, 113, 203, 216
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	33, 71
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	3 cut(s)	85, 121, 158
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	3 cut(s)	75, 223, 224
AsuHPI	GGTGA	2 cut(s)	59, 122
AvaI	CYCGRG	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	11, 285
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	44, 304
BcnI	CCSGG	3 cut(s)	75, 223, 224
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	247, 315
BlsI	GCNGC	2 cut(s)	248, 316
Bme1390I	CCNGG	3 cut(s)	75, 223, 224
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	3 cut(s)	75, 223, 224
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	11, 285
BpuMI	CCSGG	3 cut(s)	75, 223, 224
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 303
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	256, 303
BseXI	GCAGC	1 cut(s)	258
BseYI	CCCAGC	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	11, 283
BshFI	GGCC	2 cut(s)	35, 73
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	74, 200, 223
BslI	CCNNNNNNNGG	2 cut(s)	256, 303
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	35, 73
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	77, 105, 115, 208
BspACI	CCGC	7 cut(s)	9, 137, 283, 287, 298, 314, 317
BspANI	GGCC	2 cut(s)	35, 73
BspFNI	CGCG	2 cut(s)	11, 283
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	5 cut(s)	85, 110, 113, 203, 216
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	77, 105, 115, 208
BstC8I	GCNNGC	2 cut(s)	187, 285
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	11, 283
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	80, 108, 118, 211
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	4 cut(s)	77, 105, 115, 208
BstSCI	CCNGG	3 cut(s)	73, 221, 222
BstUI	CGCG	2 cut(s)	11, 283
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	11, 285
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	35, 73
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	187, 285
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	71
Cfr9I	CCCGGG	1 cut(s)	222
CviAII	CATG	3 cut(s)	40, 44, 323
CviJI	RGCY	5 cut(s)	35, 68, 73, 185, 249
CviKI_1	RGCY	5 cut(s)	35, 68, 73, 185, 249
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	79, 107, 117, 210
DpnII	GATC	4 cut(s)	77, 105, 115, 208
Ecl136II	GAGCTC	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	3 cut(s)	43, 47, 326
FaiI	YATR	4 cut(s)	41, 45, 243, 324
FatI	CATG	3 cut(s)	39, 43, 322
FauI	CCCGC	4 cut(s)	130, 276, 305, 310
Fnu4HI	GCNGC	2 cut(s)	247, 315
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	247, 315
FspBI	CTAG	1 cut(s)	340
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	247, 315
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	35, 73
HapII	CCGG	3 cut(s)	74, 200, 223
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	43, 47, 326
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HpaII	CCGG	3 cut(s)	74, 200, 223
HphI	GGTGA	2 cut(s)	59, 122
Hpy188III	TCNNGA	1 cut(s)	151
HpyAV	CCTTC	4 cut(s)	46, 95, 260, 341
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	43, 47, 326
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	77, 105, 115, 208
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	4 cut(s)	54, 87, 213, 236
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	4 cut(s)	79, 107, 117, 210
MboI	GATC	4 cut(s)	77, 105, 115, 208
MboII	GAAGA	3 cut(s)	16, 107, 285
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	85, 121, 158, 203
MnlI	CCTC	3 cut(s)	6, 10, 163
Mph1103I	ATGCAT	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	3 cut(s)	74, 200, 223
MspR9I	CCNGG	3 cut(s)	75, 223, 224
MvnI	CGCG	2 cut(s)	11, 283
NciI	CCSGG	3 cut(s)	75, 223, 224
NdeII	GATC	4 cut(s)	77, 105, 115, 208
NlaIII	CATG	3 cut(s)	43, 47, 326
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	248, 316
Psp124BI	GAGCTC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	187
SatI	GCNGC	2 cut(s)	247, 315
Sau3AI	GATC	4 cut(s)	77, 105, 115, 208
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	75, 223, 224
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	2 cut(s)	174, 187
SfaNI	GCATC	1 cut(s)	30
SmaI	CCCGGG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	4 cut(s)	85, 121, 158, 203
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	7 cut(s)	9, 137, 283, 287, 298, 314, 317
SspMI	CTAG	1 cut(s)	340
SstI	GAGCTC	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	73, 221, 222
TasI	AATT	4 cut(s)	85, 121, 158, 203
TauI	GCSGC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	17, 28, 114
TspGWI	ACGGA	1 cut(s)	201
TspMI	CCCGGG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	3 cut(s)	85, 121, 158
XmaI	CCCGGG	1 cut(s)	222
XspI	CTAG	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.