Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

50432976 .. 50438569

Gene Structure 5594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGCCTCCGGGGCAGCCACTGATTCCGTTGGAAGAGCGGCTGCTGGCGAAGCTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCATCGACTGCCTCTGATATTGACCGTGAAAGTTTTCAGCTTTAAGGTACATGTGCAATACCTTCATGTTAATGCAGCTATTGATTCCAGCATAGGCCTTAACCCAGCCCCTCTTTTAGAGTTGTCAGCAACAATTGGAAGTAAGGATCTTAGTTTGGTTGGTGAAATTGGAATTCAAGTCCTTATTAGAGAGGAGAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009605 GO:0009607 GO:0009617 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071944 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

113

Amino Acids

12.33

Weight (kDa)

5.86

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	3 cut(s)	40, 76, 105
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	3 cut(s)	55, 174, 212
AluI	AGCT	3 cut(s)	55, 174, 212
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	91, 109, 229
ApeKI	GCWGC	3 cut(s)	16, 43, 209
ApoI	RAATTY	1 cut(s)	306
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	28, 30, 221
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	96, 106
BcnI	CCSGG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	4 cut(s)	17, 41, 44, 210
BlsI	GCNGC	4 cut(s)	18, 42, 45, 211
Bme1390I	CCNGG	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	11, 112
BsaXI	ACNNNNNCTCC	3 cut(s)	56, 86, 320
BseDI	CCNNGG	2 cut(s)	11, 112
BseXI	GCAGC	3 cut(s)	28, 30, 221
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	3 cut(s)	93, 111, 231
BsiSI	CCGG	1 cut(s)	11
BsnI	GGCC	3 cut(s)	93, 111, 231
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	40, 76, 105
BspANI	GGCC	3 cut(s)	93, 111, 231
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	11, 112
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	48, 57
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 52, 56
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	28, 30, 221
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	93, 111, 231
BtgI	CCRYGG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	48, 57
CaiI	CAGNNNCTG	1 cut(s)	22
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	2 cut(s)	185, 200
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	188, 203
FaiI	YATR	3 cut(s)	186, 201, 227
FatI	CATG	2 cut(s)	184, 199
Fnu4HI	GCNGC	4 cut(s)	17, 41, 44, 210
Fsp4HI	GCNGC	4 cut(s)	17, 41, 44, 210
GluI	GCNGC	4 cut(s)	17, 41, 44, 210
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	93, 111, 231
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	188, 203
HinfI	GANTC	3 cut(s)	25, 65, 218
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	64, 150
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	190, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 52, 56
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	188, 203
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	24, 32, 41, 235, 252
Lsp1109I	GCAGC	3 cut(s)	28, 30, 221
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	4 cut(s)	267, 300, 306, 331
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	12, 42
MnlI	CCTC	4 cut(s)	18, 156, 255, 319
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	177, 204, 234
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	13, 52, 56
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	188, 203
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	231
PciI	ACATGT	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	25, 218
PkrI	GCNGC	4 cut(s)	18, 42, 45, 211
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PscI	ACATGT	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	177, 204, 234
SatI	GCNGC	4 cut(s)	17, 41, 44, 210
Sau3AI	GATC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	5 cut(s)	57, 176, 183, 198, 214
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	267, 300, 306, 331
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	3 cut(s)	40, 76, 105
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	86, 123, 139
TasI	AATT	4 cut(s)	267, 300, 306, 331
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	25, 218
Tru1I	TTAA	3 cut(s)	177, 204, 234
Tru9I	TTAA	3 cut(s)	177, 204, 234
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	3 cut(s)	16, 43, 209
TspDTI	ATGAA	2 cut(s)	109, 188
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.