RLG00000019736

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
56125068 .. 56125490
423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019736

Sequence Viewer

Length: 423 bp
ATGGACTTGTTGAGCCAGCGACAGCCTATCGAGGCGGGCGATGAGGAATTTGAGGGCCTCGGTGATCTTTCTAGAGGGAGGGATGGGGAATTTGATGAAGACTTGGAGGGAGTGAGAGGAGAGGTAGGAATTGATGGCGGAGAGGGCAGATTGCTAGAAGGAGTGGTCTTTGTAGAGGTCGACATTGGAGATGGAGCCGTTGGGGCTGTCGCTAATTCCGATGGAGGAGGGGAGGCTGCTGGCAAAGCTGGCGTCGGAGTCTTGGTGGTGAAGTGGTCGAGCGGCCTTGATGGTGGTTGTGGCCTTGGGTTCATCAACGGCTTGGGTCGCCGGCTGCCTCTCATAGTGACTGTGAAAGTTTTCAGGTGGGATTCCAATTTTGGTAGTGGAGATGAGAGATTGAAATTTTGGATTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.64

Weight (kDa)

4.33

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccI GTMKAC 1 cut(s) 180
AciI CCGC 3 cut(s) 35, 138, 282
AcsI RAATTY 3 cut(s) 47, 89, 404
AcyI GRCGYC 1 cut(s) 252
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AoxI GGCC 3 cut(s) 55, 283, 301
ApeKI GCWGC 2 cut(s) 236, 334
ApoI RAATTY 3 cut(s) 47, 89, 404
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 74, 280
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 223, 321
BccI CCATC 5 cut(s) 77, 128, 185, 215, 284
BceAI ACGGC 2 cut(s) 182, 334
BfaI CTAG 2 cut(s) 72, 155
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 3 cut(s) 237, 283, 335
BlsI GCNGC 3 cut(s) 238, 284, 336
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 58, 304
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bse118I RCCGGY 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 58, 304
BseGI GGATG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 132, 240
BseXI GCAGC 2 cut(s) 223, 321
BshFI GGCC 3 cut(s) 57, 285, 303
BsiSI CCGG 1 cut(s) 331
BsnI GGCC 3 cut(s) 57, 285, 303
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 3 cut(s) 35, 138, 282
BspANI GGCC 3 cut(s) 57, 285, 303
BspLI GGNNCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 58, 304
BssMI GATC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 5 cut(s) 17, 37, 241, 250, 332
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 5 cut(s) 144, 203, 245, 249, 327
BstV1I GCAGC 2 cut(s) 223, 321
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 3 cut(s) 57, 285, 303
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 5 cut(s) 17, 37, 241, 250, 332
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 241
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaiI YATR 1 cut(s) 344
FauI CCCGC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 237, 283, 335
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 237, 283, 335
FspBI CTAG 2 cut(s) 72, 155
GluI GCNGC 3 cut(s) 237, 283, 335
HaeIII GGCC 3 cut(s) 57, 285, 303
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 258, 371
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 74, 280
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 220, 257
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 203, 245, 249, 327
Hsp92I GRCGYC 1 cut(s) 252
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 5 cut(s) 29, 225, 234, 344, 349
Lsp1109I GCAGC 2 cut(s) 223, 321
MaeI CTAG 2 cut(s) 72, 155
MaeIII GTNAC 1 cut(s) 346
MalI GATC 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 282
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 110
MluCI AATT 6 cut(s) 47, 89, 129, 214, 376, 404
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 359
MspI CCGG 1 cut(s) 331
MwoI GCNNNNNNNGC 5 cut(s) 144, 203, 245, 249, 327
NaeI GCCGGC 1 cut(s) 332
NdeII GATC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 330
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 216
PdiI GCCGGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 238, 284, 336
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 55
SalI GTCGAC 1 cut(s) 179
SatI GCNGC 3 cut(s) 237, 283, 335
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 267
SetI ASST 4 cut(s) 126, 180, 250, 368
Sse9I AATT 6 cut(s) 47, 89, 129, 214, 376, 404
SsiI CCGC 3 cut(s) 35, 138, 282
SspMI CTAG 2 cut(s) 72, 155
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 30, 180, 278
TasI AATT 6 cut(s) 47, 89, 129, 214, 376, 404
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 371
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 236, 334
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 111, 301
XapI RAATTY 3 cut(s) 47, 89, 404
XbaI TCTAGA 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 2 cut(s) 72, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.