Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

9143784 .. 9144224

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG108200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGCCTCCGGGGCCGCCGCTGATTCCTTTGGAGGAGCGCCTGCTGGCGAAGCTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGGTCTTGATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACTGTGAAAGTTTTCAGAAGTTGTCAAATTGCTGCATTTGCATGTAATGTGATATTCTTGATGTTGGGGGCGGTAACTGTGGTCGGAGCCGAGCTCGCGTTCGAGGCCGAAATCGGAATTCATTTTGGGGTGAGTGGTTGGTGGTTGGTGGCTAGTGGCGGAGCTTGCTTCGGAGGTGCGGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.1

Weight (kDa)

6.55

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	254
AciI	CCGC	8 cut(s)	17, 20, 76, 105, 227, 315, 335, 338
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	59
AluBI	AGCT	3 cut(s)	55, 250, 320
AluI	AGCT	3 cut(s)	55, 250, 320
Alw21I	GWGCWC	1 cut(s)	252
AoxI	GGCC	3 cut(s)	14, 109, 261
ApeKI	GCWGC	2 cut(s)	142, 188
ApoI	RAATTY	1 cut(s)	273
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	129, 175
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	5 cut(s)	17, 20, 143, 189, 336
BlsI	GCNGC	5 cut(s)	18, 21, 144, 190, 337
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	6, 15, 244
BmrFI	CCNGG	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuMI	CCSGG	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	11, 112
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse118I	RCCGGY	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	11, 112
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	129, 175
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	16, 111, 263
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	11, 139
BsnI	GGCC	3 cut(s)	16, 111, 263
Bsp1286I	GDGCHC	1 cut(s)	252
BspACI	CCGC	8 cut(s)	17, 20, 76, 105, 227, 315, 335, 338
BspANI	GGCC	3 cut(s)	16, 111, 263
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	6, 15, 244
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	11, 112
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	92, 160, 235
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	6 cut(s)	44, 48, 57, 140, 252, 322
BstDSI	CCRYGG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 194, 251, 260, 321
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	129, 175
BsuRI	GGCC	3 cut(s)	16, 111, 263
BtgI	CCRYGG	1 cut(s)	112
Cac8I	GCNNGC	6 cut(s)	44, 48, 57, 140, 252, 322
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	48
CviAII	CATG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	2 cut(s)	91, 330
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	5 cut(s)	17, 20, 143, 189, 336
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	17, 20, 143, 189, 336
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	5 cut(s)	17, 20, 143, 189, 336
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	16, 111, 263
HapII	CCGG	2 cut(s)	11, 139
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	25, 65
HpaII	CCGG	2 cut(s)	11, 139
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	6 cut(s)	64, 150, 173, 242, 272, 329
Hpy188III	TCNNGA	2 cut(s)	95, 214
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	92, 160, 235
HpyCH4V	TGCA	2 cut(s)	191, 197
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 194, 251, 260, 321
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	4, 37, 242, 317
LpnPI	CCDG	5 cut(s)	24, 32, 41, 56, 152
Lsp1109I	GCAGC	2 cut(s)	129, 175
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	183, 273
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	42, 220
MnlI	CCTC	5 cut(s)	18, 28, 156, 253, 323
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	2 cut(s)	11, 139
MspR9I	CCNGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	8 cut(s)	13, 52, 56, 135, 194, 251, 260, 321
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	3 cut(s)	6, 15, 244
NmeAIII	GCCGAG	1 cut(s)	271
NspI	RCATGY	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	18, 21, 144, 190, 337
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	6, 15, 244
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	252
SatI	GCNGC	5 cut(s)	17, 20, 143, 189, 336
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	4 cut(s)	57, 252, 322, 334
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	183, 273
SsiI	CCGC	8 cut(s)	17, 20, 76, 105, 227, 315, 335, 338
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	92, 160, 235
TaqI	TCGA	3 cut(s)	86, 123, 258
TasI	AATT	2 cut(s)	183, 273
TauI	GCSGC	3 cut(s)	19, 22, 338
TfiI	GAWTC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	142, 188
TspDTI	ATGAA	2 cut(s)	109, 266
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.