Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003073

Physical Location & Seq

Genomic Coordinates Forward (+)

10648441 .. 10648671

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAGCCTCCGGGGCCGCCACTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTTGGAGTCGTGGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGGTGGCTGTGGGGTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACAGTGAAAGTTTTCAGGTGGGATTCCAATTTTGGGAGTGGAGATGGGAGATTGAAGTTTTGGATTAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.57

Weight (kDa)

9.3

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003073)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c29g0501151 RchiOBHm_Chr1g0314121 RchiOBHm_Chr3g0465601 RchiOBHm_Chr3g0471431 RchiOBHm_Chr4g0414901
rosa_laevigata	RLG00000009299 RLG00000019736 RLG00000034336
rosa_multiflora	Rmu_sc0008611.1_g000006 Rmu_sc0008990.1_g000005 Rmu_sc0016988.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140650 Rroxscaffold_3G00232870 Rroxscaffold_4G00298360 Rroxscaffold_6G00410590 Rroxscaffold_7G00190580
rosa_rugosa	Rorug05G0514000 Rorug06G0152500
rosa_samantha	Rh1AG063100 Rh1CG057100 Rh1DG060900 Rh2AG300600 Rh2AG507500 Rh2AG675700 Rh2BG139500 Rh2BG251500 Rh2BG308300 Rh2DG324800 Rh3AG108200 Rh3BG141000 Rh3CG113900 Rh4AG220200 Rh5AG334300 Rh5AG484600 Rh5CG560700 Rh5DG220200 Rh6BG336400 Rh7AG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	4 cut(s)	17, 40, 76, 105
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AoxI	GGCC	2 cut(s)	14, 91
ApeKI	GCWGC	2 cut(s)	43, 142
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	30, 129
BccI	CCATC	2 cut(s)	92, 194
BceAI	ACGGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	4 cut(s)	17, 41, 44, 143
BlsI	GCNGC	4 cut(s)	18, 42, 45, 144
Bme1390I	CCNGG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	6, 15
BmrFI	CCNGG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	30, 129
BshFI	GGCC	2 cut(s)	16, 93
BsiSI	CCGG	2 cut(s)	11, 139
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	2 cut(s)	16, 93
BspACI	CCGC	4 cut(s)	17, 40, 76, 105
BspANI	GGCC	2 cut(s)	16, 93
BspLI	GGNNCC	2 cut(s)	6, 15
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	48, 57, 140
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 52, 56, 135
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	30, 129
BsuRI	GGCC	2 cut(s)	16, 93
BtsIMutI	CAGTG	2 cut(s)	20, 165
Cac8I	GCNNGC	3 cut(s)	48, 57, 140
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	14
CviJI	RGCY	7 cut(s)	7, 16, 43, 55, 93, 111, 142
CviKI_1	RGCY	7 cut(s)	7, 16, 43, 55, 93, 111, 142
EciI	GGCGGA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	17, 41, 44, 143
Fsp4HI	GCNGC	4 cut(s)	17, 41, 44, 143
GluI	GCNGC	4 cut(s)	17, 41, 44, 143
HaeIII	GGCC	2 cut(s)	16, 93
HapII	CCGG	2 cut(s)	11, 139
HinfI	GANTC	3 cut(s)	25, 65, 179
HpaII	CCGG	2 cut(s)	11, 139
Hpy188I	TCNGA	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 52, 56, 135
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	4, 37
LpnPI	CCDG	5 cut(s)	24, 32, 41, 152, 157
Lsp1109I	GCAGC	2 cut(s)	30, 129
MbiI	CCGCTC	1 cut(s)	40
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	12, 42
MnlI	CCTC	3 cut(s)	18, 28, 156
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	167
MspI	CCGG	2 cut(s)	11, 139
MspR9I	CCNGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	13, 52, 56, 135
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	12
NgoMIV	GCCGGC	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	6, 15
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	25, 179
PkrI	GCNGC	4 cut(s)	18, 42, 45, 144
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	6, 15
PspPI	GGNCC	1 cut(s)	14
SatI	GCNGC	4 cut(s)	17, 41, 44, 143
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	2 cut(s)	57, 176
SgeI	CNNG	9 cut(s)	23, 24, 59, 68, 81, 107, 142, 151, 184
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	4 cut(s)	17, 40, 76, 105
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	86, 123
TasI	AATT	1 cut(s)	184
TauI	GCSGC	2 cut(s)	19, 43
TfiI	GAWTC	2 cut(s)	25, 179
TscAI	CASTG	2 cut(s)	27, 165
TseI	GCWGC	2 cut(s)	43, 142
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	27, 165
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.