RchiOBHm_Chr3g0471431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003073
Physical Location & Seq
Forward (+)
17294983 .. 17295486
504 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43717

Sequence Viewer

Length: 504 bp
ATGCCTCTCGAAAGAGATTTCTCCCCTCCGCCTCCTTTCTCTGCTGGTGGAGGCCATGTACTTACGATCTGGATGGATGGCTTTGCCTTCTTCTCTGGTCCAAACTGTGCTGGTGAAGACGGGCCTCCCCGTCGAAACCTACCTAATTTTCTCTCTCAAGCTTTTGATGGGGAAGGTAAAGGTGTTCTGGTGTTTGATCGGATCTACAGAGGTATGGTCGTGGGTGACACGAATGGCAGCGCTTGGTGTCTGAGGCCGTTGGAGATACTGGGATTTCAATTTGATGGTGGCGCTCTCTGGCATGGCTGGGATCGGTCGATTCTTTTGGAGGACAAAGATACCGGTGGTGTTCTTGATTTTACTTTGCCGGCAGAGGATGTCAGGCTGGAATTGGGTTTTGAGTATGGTGGTGGGACTCATTATCCTCTGCTGGAATTGGGTCCATTCCTATCCAGGCTGCTTGCTGGTATGGGCGGCGAGTGGTGTATGATGGCGGCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.13

Weight (kDa)

4.49

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 29, 474, 494, 497
AclWI GGATC 2 cut(s) 209, 318
AfaI GTAC 1 cut(s) 60
AfeI AGCGCT 1 cut(s) 241
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 452
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 2 cut(s) 209, 318
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 52, 122, 254
ApeKI GCWGC 2 cut(s) 237, 457
AsiGI ACCGGT 1 cut(s) 341
AspLEI GCGC 2 cut(s) 242, 293
AspS9I GGNCC 3 cut(s) 98, 122, 440
AsuHPI GGTGA 2 cut(s) 125, 236
AvaII GGWCC 2 cut(s) 98, 440
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 249, 444
BccI CCATC 5 cut(s) 67, 71, 161, 278, 484
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 2 cut(s) 243, 294
BisI GCNGC 5 cut(s) 238, 458, 475, 495, 498
BlsI GCNGC 5 cut(s) 239, 459, 476, 496, 499
Bme1390I CCNGG 1 cut(s) 454
Bme18I GGWCC 2 cut(s) 98, 440
BmgT120I GGNCC 3 cut(s) 98, 122, 440
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 278
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse118I RCCGGY 2 cut(s) 341, 367
Bse1I ACTGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 454
BseGI GGATG 3 cut(s) 78, 82, 382
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 249, 444
BseYI CCCAGC 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 54, 124, 256
BshTI ACCGGT 1 cut(s) 341
BsiEI CGRYCG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 342, 368
BslFI GGGAC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 3 cut(s) 54, 124, 256
Bsp143I GATC 4 cut(s) 66, 196, 201, 310
BspACI CCGC 4 cut(s) 29, 474, 494, 497
BspANI GGCC 3 cut(s) 54, 124, 256
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 2 cut(s) 209, 318
BsrFI RCCGGY 2 cut(s) 341, 367
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 2 cut(s) 341, 367
BssMI GATC 4 cut(s) 66, 196, 201, 310
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 369, 462
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 78, 82, 382
BstH2I RGCGCY 2 cut(s) 243, 294
BstHHI GCGC 2 cut(s) 242, 293
BstKTI GATC 4 cut(s) 69, 199, 204, 313
BstMBI GATC 4 cut(s) 66, 196, 201, 310
BstMCI CGRYCG 1 cut(s) 317
BstNI CCWGG 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 249, 444
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 3 cut(s) 54, 124, 256
BtsCI GGATG 3 cut(s) 78, 82, 382
Cac8I GCNNGC 2 cut(s) 369, 462
CfoI GCGC 2 cut(s) 242, 293
Cfr10I RCCGGY 2 cut(s) 341, 367
Cfr13I GGNCC 3 cut(s) 98, 122, 440
Csp6I GTAC 1 cut(s) 59
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 2 cut(s) 56, 302
CviJI RGCY 9 cut(s) 54, 81, 124, 161, 256, 306, 385, 457, 500
CviKI_1 RGCY 9 cut(s) 54, 81, 124, 161, 256, 306, 385, 457, 500
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 251
DpnI GATC 4 cut(s) 68, 198, 203, 312
DpnII GATC 4 cut(s) 66, 196, 201, 310
EciI GGCGGA 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 98, 440
Eco47III AGCGCT 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 452
FaeI CATG 2 cut(s) 59, 305
FaiI YATR 6 cut(s) 57, 215, 303, 405, 470, 488
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 55, 301
Fnu4HI GCNGC 5 cut(s) 238, 458, 475, 495, 498
FokI GGATG 3 cut(s) 85, 89, 389
Fsp4HI GCNGC 5 cut(s) 238, 458, 475, 495, 498
GlaI GCGC 2 cut(s) 241, 292
GluI GCNGC 5 cut(s) 238, 458, 475, 495, 498
GsaI CCCAGC 1 cut(s) 310
HaeII RGCGCY 2 cut(s) 243, 294
HaeIII GGCC 3 cut(s) 54, 124, 256
HapII CCGG 2 cut(s) 342, 368
HhaI GCGC 2 cut(s) 242, 293
Hin1II CATG 2 cut(s) 59, 305
Hin6I GCGC 2 cut(s) 240, 291
HinP1I GCGC 2 cut(s) 240, 291
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 319, 415
HpaII CCGG 2 cut(s) 342, 368
HphI GGTGA 2 cut(s) 125, 236
Hpy188I TCNGA 2 cut(s) 201, 252
Hpy188III TCNNGA 3 cut(s) 8, 70, 353
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 97, 167
HpyCH4III ACNGT 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 2 cut(s) 59, 305
HspAI GCGC 2 cut(s) 240, 291
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 66, 196, 201, 310
Lsp1109I GCAGC 2 cut(s) 249, 444
MaeIII GTNAC 1 cut(s) 224
MalI GATC 4 cut(s) 68, 198, 203, 312
MboI GATC 4 cut(s) 66, 196, 201, 310
MboII GAAGA 2 cut(s) 82, 128
MflI RGATCY 1 cut(s) 201
MluCI AATT 4 cut(s) 145, 278, 389, 434
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 367
MspI CCGG 2 cut(s) 342, 368
MspR9I CCNGG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 454
NaeI GCCGGC 1 cut(s) 369
NdeII GATC 4 cut(s) 66, 196, 201, 310
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 59, 305
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 224
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 5 cut(s) 239, 459, 476, 496, 499
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 452
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 3 cut(s) 98, 122, 440
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SatI GCNGC 5 cut(s) 238, 458, 475, 495, 498
Sau3AI GATC 4 cut(s) 66, 196, 201, 310
Sau96I GGNCC 3 cut(s) 98, 122, 440
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 454
SetI ASST 6 cut(s) 141, 145, 163, 178, 184, 214
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 98, 440
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 4 cut(s) 145, 278, 389, 434
SsiI CCGC 4 cut(s) 29, 474, 494, 497
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 9, 133, 317
TaqII GACCGA 1 cut(s) 303
TasI AATT 4 cut(s) 145, 278, 389, 434
TatI WGTACW 1 cut(s) 58
TauI GCSGC 3 cut(s) 477, 497, 500
TfiI GAWTC 1 cut(s) 319
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 237, 457
Tsp45I GTSAC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 98, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.