Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Forward (+)

9277774 .. 9278259

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGAAATACTCCTCCAAAATCTTCAAAACCAAGATACTAGGTGAGCGAACCGTGGTGTTATGTGGCACTGCCGGTCACAAATTTGTGGCTTCCAACGAAGAAAAGCTCTTTGCAGCATGGAGACCTCACTCAATGCAAAAGCTCTTCCGTTCTTCATACCAAAAAGCTGCTTCCATCATCATGCCAAGACAAATGGAAAAGCACGTATCTCACGCACCGGGGTTTCTAAGAGCCGAAGCCCTGGTTGGCTACGTGGCAGCGATGGATTTCATGGTTCTCGACCACCTGAAAACGCACTGGGATGGCAAACAGGTGGTCGATGCTTATCGCCTCACGCAGCTACTCGTTTTGACTCTCTCGGCCAAGTTATTCATGAGACTCGAAGGCCATCGTCGTATTGATAAGCTTGTGGAGTTGATGGACACCATGATGCTGGCGCTTCACACTATTCCTGTGAATATTCCGGGGACTGTATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

9.91

Isoelectric Point (pI)

21.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	5 cut(s)	109, 145, 170, 343, 409
AluI	AGCT	5 cut(s)	109, 145, 170, 343, 409
Alw26I	GTCTC	2 cut(s)	118, 373
AoxI	GGCC	2 cut(s)	363, 388
ApeKI	GCWGC	4 cut(s)	116, 170, 260, 340
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	1 cut(s)	442
AsuC2I	CCSGG	2 cut(s)	222, 468
AsuHPI	GGTGA	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	128, 157, 272, 352
BccI	CCATC	5 cut(s)	185, 259, 299, 399, 415
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	2 cut(s)	222, 468
BcoDI	GTCTC	2 cut(s)	118, 373
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	443
BisI	GCNGC	4 cut(s)	117, 171, 261, 341
BlsI	GCNGC	4 cut(s)	118, 172, 262, 342
Bme1390I	CCNGG	3 cut(s)	222, 245, 468
BmrFI	CCNGG	3 cut(s)	222, 245, 468
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	313, 423
BmuI	ACTGGG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	222, 468
BsaAI	YACGTR	2 cut(s)	208, 256
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	54, 221, 243, 467
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	4 cut(s)	54, 221, 243, 467
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	4 cut(s)	128, 157, 272, 352
BshFI	GGCC	2 cut(s)	365, 390
BsiSI	CCGG	3 cut(s)	75, 221, 467
BsmAI	GTCTC	2 cut(s)	118, 373
BsnI	GGCC	2 cut(s)	365, 390
Bso31I	GGTCTC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	365, 390
BspHI	TCATGA	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	54, 221, 243, 467
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	55, 475
Bst6I	CTCTTC	1 cut(s)	152
BstBAI	YACGTR	2 cut(s)	208, 256
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	118, 373
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	220, 243, 466
BstV1I	GCAGC	4 cut(s)	128, 157, 272, 352
BstXI	CCANNNNNNTGG	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	365, 390
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 298
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	74
CviAII	CATG	5 cut(s)	120, 184, 274, 376, 430
DdeI	CTNAG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	123, 187, 277, 379, 433
FaiI	YATR	7 cut(s)	64, 121, 160, 185, 275, 377, 431
FatI	CATG	5 cut(s)	119, 183, 273, 375, 429
Fnu4HI	GCNGC	4 cut(s)	117, 171, 261, 341
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	117, 171, 261, 341
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	117, 171, 261, 341
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	365, 390
HapII	CCGG	3 cut(s)	75, 221, 467
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	123, 187, 277, 379, 433
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	355, 381
HpaII	CCGG	3 cut(s)	75, 221, 467
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	281, 376
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	55, 475
HpyCH4IV	ACGT	2 cut(s)	207, 255
HpyCH4V	TGCA	2 cut(s)	116, 139
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	207, 255
Hsp92II	CATG	5 cut(s)	123, 187, 277, 379, 433
HspAI	GCGC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	152
Lsp1109I	GCAGC	4 cut(s)	128, 157, 272, 352
LweI	GCATC	2 cut(s)	313, 423
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	207, 255
MaeIII	GTNAC	1 cut(s)	77
MboII	GAAGA	5 cut(s)	16, 16, 113, 139, 147
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	349, 375
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	25, 138, 344
MslI	CAYNNNNRTG	3 cut(s)	182, 303, 431
MspI	CCGG	3 cut(s)	75, 221, 467
MspR9I	CCNGG	3 cut(s)	222, 245, 468
MvaI	CCWGG	1 cut(s)	245
NciI	CCSGG	2 cut(s)	222, 468
NlaIII	CATG	5 cut(s)	123, 187, 277, 379, 433
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	118, 172, 262, 342
PleI	GAGTC	2 cut(s)	349, 375
PpsI	GAGTC	2 cut(s)	349, 375
Ppu21I	YACGTR	2 cut(s)	208, 256
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
RseI	CAYNNNNRTG	3 cut(s)	182, 303, 431
SapI	GCTCTTC	1 cut(s)	152
SatI	GCNGC	4 cut(s)	117, 171, 261, 341
SchI	GAGTC	2 cut(s)	349, 375
ScrFI	CCNGG	3 cut(s)	222, 245, 468
SfaNI	GCATC	2 cut(s)	313, 423
SmiMI	CAYNNNNRTG	3 cut(s)	182, 303, 431
Sse9I	AATT	1 cut(s)	83
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	220, 243, 466
TaaI	ACNGT	2 cut(s)	55, 475
TaiI	ACGT	2 cut(s)	210, 258
TaqI	TCGA	3 cut(s)	282, 321, 384
TasI	AATT	1 cut(s)	83
TscAI	CASTG	2 cut(s)	76, 305
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	4 cut(s)	116, 170, 260, 340
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	17, 147, 262, 364, 470
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	76, 305
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.