RLG00000006730

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000778
Physical Location & Seq
Forward (+)
9995125 .. 9996043
919 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006730

Sequence Viewer

Length: 735 bp
ATGAGAAAGGAGGTTCTTTTGTTGATCAAGGAGAAGAAAGCAGCAATGTCTAGTGGAGCCCAAATGCACGATATCATGTCTTTCATGTTGTTCAAAGCAGATCCCACTGGTCGTTTCGTACCGGAGAATGAAGTTGCTGACAAAATTATGGGTTTGATGGCCGGTGGATTCCACTCGCCTTCCATGGCTACAAGTTTTCTAATCAAGTATCTTGGAGAGAACCCTGAAATATGTGACAAAGTCCGAACAGAACAATTAGAGATTACACGCTCAAAACAATCCGGTGAAGCACTTAATTGGGATGATATCCAGAAGATGAAATATTCTTGGGGTGTTGCACTTGAAGTTATGAGGCTGGTGCCACCTCTTCAAGGAACATTTAGAGAGGTCATTACCGACTTCACCTACGAAGGTTATACAATTCCAAAAGGGTGGAAGGTGTATTGGTCGGCTAGCAGCACAAACAAAGTCTCCGAGTATTTTCCAGCACCAGAAAAGTTCGATCCAACCAGGTTCGAGAATGGAAAAGCTCCCCCTGCTTACTCAAACATCCCATTTGGAAGCGGACCTCGAATTTGTCCAGGAAAAGACTATGCTCGTATGCAACTCCTGTGTTCGCTTCATCACATTGTGACCAAATACAAATGGGAAGTGATAAATCCAAACGCTAAGATCGCAAGTGGTATGAATCCCGTTCCCGAAGAAGGCATTCACATTCGCCTCCAACCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

245

Amino Acids

27.63

Weight (kDa)

8.61

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 222 6e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 564
AclWI GGATC 2 cut(s) 95, 497
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 371, 704
AgsI TTSAA 3 cut(s) 94, 344, 371
AjnI CCWGG 2 cut(s) 509, 580
AluBI AGCT 1 cut(s) 530
AluI AGCT 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 2 cut(s) 95, 497
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 41, 456
ApoI RAATTY 1 cut(s) 573
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
Asp700I GAANNNNTTC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 296, 394
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 53, 468
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 511, 582
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 51, 453
BisI GCNGC 2 cut(s) 42, 457
BlsI GCNGC 2 cut(s) 43, 458
Bme1390I CCNGG 2 cut(s) 511, 582
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 58, 360
BmrFI CCNGG 2 cut(s) 511, 582
BmtI GCTAGC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 2 cut(s) 121, 281
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 704
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 2 cut(s) 511, 582
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 307, 549
BseLI CCNNNNNNNGG 2 cut(s) 371, 704
BseMI GCAATG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 53, 468
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 3 cut(s) 122, 162, 282
BslI CCNNNNNNNGG 2 cut(s) 371, 704
BsmAI GTCTC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 4 cut(s) 24, 100, 502, 672
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 58, 360
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 95, 497
BspT107I GGYRCC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 4 cut(s) 24, 100, 502, 672
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 511, 582
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 307, 549
BstKTI GATC 4 cut(s) 27, 103, 505, 675
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 4 cut(s) 24, 100, 502, 672
BstMWI GCNNNNNNNGC 2 cut(s) 536, 674
BstNI CCWGG 2 cut(s) 511, 582
BstSCI CCNGG 2 cut(s) 509, 580
BstV1I GCAGC 2 cut(s) 53, 468
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 307, 549
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 566
CsiI ACCWGGT 1 cut(s) 509
Csp6I GTAC 1 cut(s) 119
CviAII CATG 3 cut(s) 76, 85, 184
CviJI RGCY 6 cut(s) 59, 161, 188, 355, 452, 530
CviKI_1 RGCY 6 cut(s) 59, 161, 188, 355, 452, 530
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 669
DpnI GATC 4 cut(s) 26, 102, 504, 674
DpnII GATC 4 cut(s) 24, 100, 502, 672
DraIII CACNNNGTG 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 2 cut(s) 73, 307
Eco47I GGWCC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 509, 580
EcoRV GATATC 2 cut(s) 73, 307
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 79, 88, 187
FatI CATG 3 cut(s) 75, 84, 183
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 42, 457
FokI GGATG 2 cut(s) 314, 536
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 42, 457
FspBI CTAG 2 cut(s) 51, 453
GluI GCNGC 2 cut(s) 42, 457
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 122, 162, 282
Hin1II CATG 3 cut(s) 79, 88, 187
HinfI GANTC 2 cut(s) 168, 688
HpaII CCGG 3 cut(s) 122, 162, 282
HphI GGTGA 2 cut(s) 296, 394
Hpy188I TCNGA 2 cut(s) 245, 475
Hpy188III TCNNGA 3 cut(s) 310, 517, 698
HpyAV CCTTC 4 cut(s) 189, 404, 430, 698
HpyCH4V TGCA 3 cut(s) 67, 338, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 536, 674
HpyF3I CTNAG 1 cut(s) 669
Hsp92II CATG 3 cut(s) 79, 88, 187
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 4 cut(s) 24, 100, 502, 672
LmnI GCTCC 2 cut(s) 56, 535
Lsp1109I GCAGC 2 cut(s) 53, 468
MabI ACCWGGT 1 cut(s) 509
MaeI CTAG 2 cut(s) 51, 453
MaeIII GTNAC 2 cut(s) 233, 631
MalI GATC 4 cut(s) 26, 102, 504, 674
MboI GATC 4 cut(s) 24, 100, 502, 672
MboII GAAGA 4 cut(s) 46, 325, 359, 713
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 5 cut(s) 144, 254, 295, 420, 573
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 6 cut(s) 4, 345, 375, 379, 579, 731
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 1 cut(s) 294
MspI CCGG 3 cut(s) 122, 162, 282
MspR9I CCNGG 2 cut(s) 511, 582
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 2 cut(s) 511, 582
MwoI GCNNNNNNNGC 2 cut(s) 536, 674
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 24, 100, 502, 672
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 3 cut(s) 79, 88, 187
NlaIV GGNNCC 2 cut(s) 58, 360
NmuCI GTSAC 2 cut(s) 233, 631
PctI GAATGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 168, 688
PflFI GACNNNGTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 2 cut(s) 43, 458
Psp6I CCWGG 2 cut(s) 509, 580
PspGI CCWGG 2 cut(s) 509, 580
PspN4I GGNNCC 2 cut(s) 58, 360
PspPI GGNCC 1 cut(s) 566
PsuI RGATCY 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 42, 457
Sau3AI GATC 4 cut(s) 24, 100, 502, 672
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 511, 582
SduI GDGCHC 1 cut(s) 61
SexAI ACCWGGT 1 cut(s) 509
SinI GGWCC 1 cut(s) 566
Sse9I AATT 5 cut(s) 144, 254, 295, 420, 573
SsiI CCGC 1 cut(s) 564
SspI AATATT 1 cut(s) 323
SspMI CTAG 2 cut(s) 51, 453
StyD4I CCNGG 2 cut(s) 509, 580
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 3 cut(s) 501, 516, 571
TasI AATT 5 cut(s) 144, 254, 295, 420, 573
TfiI GAWTC 2 cut(s) 168, 688
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 233, 631
TseI GCWGC 2 cut(s) 41, 456
Tsp45I GTSAC 2 cut(s) 233, 631
TspDTI ATGAA 5 cut(s) 73, 144, 332, 611, 701
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 566
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 2 cut(s) 51, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.