Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000999.1

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Reverse (-)

31672 .. 32184

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000999.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggaaaagcacgtatctcaggcacaggggtttctgagagccgaagccctggttggctacgttgcagcgatggattccatggttctcgaccacctgaaaactcactgggatggcaaacaggtggtcgaggctcatcacctcacgcagctactcgttttgactctctcggccaagtcattcatgggactcgaagaccattgtcgtattgataagcttgcgaagttgatggacaccatgatgccggcgcttcacactattcctgtgaatattccggggactgcatttcatcgagcaatgaaagctgtgccggctgcgagggagattattcagtcttttgttaaggagaagaaagaagttatggcgtctacaggaaacaaaatgcatgattttttgtcttatatgattgctacggcagacccggttaccggaaggttcatgccggataatgaaattgctgacaaaatcatggggattgtggccgcttccttaaactctccagctatgactgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

170

Amino Acids

18.74

Weight (kDa)

6.49

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	1 cut(s)	480
AcoI	YGGCCR	2 cut(s)	168, 477
AcyI	GRCGYC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	148, 214, 302, 500
AluI	AGCT	4 cut(s)	148, 214, 302, 500
AoxI	GGCC	2 cut(s)	168, 477
ApeKI	GCWGC	3 cut(s)	65, 145, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	247
AsuC2I	CCSGG	2 cut(s)	273, 419
AsuHPI	GGTGA	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	77, 157, 298
BccI	CCATC	3 cut(s)	64, 104, 220
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	273, 419
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	4 cut(s)	66, 146, 312, 480
BlsI	GCNGC	4 cut(s)	67, 147, 313, 481
Bme1390I	CCNGG	3 cut(s)	50, 273, 419
BmrFI	CCNGG	3 cut(s)	50, 273, 419
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	115
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	273, 419
BsaAI	YACGTR	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	48, 78, 272
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	2 cut(s)	241, 307
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	48, 78, 272
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	26, 32
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	77, 157, 298
BshFI	GGCC	2 cut(s)	170, 479
BsiSI	CCGG	6 cut(s)	242, 272, 308, 419, 426, 440
BslFI	GGGAC	2 cut(s)	198, 289
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	198, 289
BsnI	GGCC	2 cut(s)	170, 479
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	170, 479
BspCNI	CTCAG	2 cut(s)	27, 31
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	2 cut(s)	241, 307
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	2 cut(s)	241, 307
BssECI	CCNNGG	3 cut(s)	48, 78, 272
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	216, 243, 309
BstDEI	CTNAG	2 cut(s)	18, 35
BstDSI	CCRYGG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 308
BstNI	CCWGG	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	48, 271, 417
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	77, 157, 298
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	170, 479
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	216, 243, 309
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	241, 307
CseI	GACGC	1 cut(s)	351
CviAII	CATG	6 cut(s)	79, 181, 235, 383, 436, 466
DdeI	CTNAG	2 cut(s)	18, 35
EaeI	YGGCCR	2 cut(s)	168, 477
Eco130I	CCWWGG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	82, 184, 238, 386, 439, 469
FaqI	GGGAC	2 cut(s)	198, 289
FatI	CATG	6 cut(s)	78, 180, 234, 382, 435, 465
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	4 cut(s)	66, 146, 312, 480
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	66, 146, 312, 480
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	66, 146, 312, 480
GsuI	CTGGAG	1 cut(s)	480
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	170, 479
HapII	CCGG	6 cut(s)	242, 272, 308, 419, 426, 440
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	6 cut(s)	82, 184, 238, 386, 439, 469
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	74, 160, 186
HpaII	CCGG	6 cut(s)	242, 272, 308, 419, 426, 440
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	423
HpyCH4IV	ACGT	2 cut(s)	12, 60
HpyCH4V	TGCA	3 cut(s)	65, 281, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 308
HpyF3I	CTNAG	2 cut(s)	18, 35
HpySE526I	ACGT	2 cut(s)	12, 60
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	82, 184, 238, 386, 439, 469
HspAI	GCGC	1 cut(s)	245
KroI	GCCGGC	2 cut(s)	241, 307
KroNI	GCCGGC	2 cut(s)	243, 309
Lsp1109I	GCAGC	3 cut(s)	77, 157, 298
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	2 cut(s)	12, 60
MaeIII	GTNAC	1 cut(s)	421
MboII	GAAGA	2 cut(s)	203, 358
MluCI	AATT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	154, 180
MnlI	CCTC	3 cut(s)	121, 149, 309
Mph1103I	ATGCAT	1 cut(s)	384
MroNI	GCCGGC	2 cut(s)	241, 307
MseI	TTAA	2 cut(s)	339, 488
MslI	CAYNNNNRTG	2 cut(s)	108, 236
MspI	CCGG	6 cut(s)	242, 272, 308, 419, 426, 440
MspR9I	CCNGG	3 cut(s)	50, 273, 419
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	299, 308
NaeI	GCCGGC	2 cut(s)	243, 309
NciI	CCSGG	2 cut(s)	273, 419
NcoI	CCATGG	1 cut(s)	78
NgoMIV	GCCGGC	2 cut(s)	241, 307
NlaIII	CATG	6 cut(s)	82, 184, 238, 386, 439, 469
NmeAIII	GCCGAG	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	384
PdiI	GCCGGC	2 cut(s)	243, 309
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	67, 147, 313, 481
PleI	GAGTC	2 cut(s)	154, 180
PpsI	GAGTC	2 cut(s)	154, 180
Ppu21I	YACGTR	1 cut(s)	13
PshAI	GACNNNNGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	108, 236
SaqAI	TTAA	2 cut(s)	339, 488
SatI	GCNGC	4 cut(s)	66, 146, 312, 480
SchI	GAGTC	2 cut(s)	154, 180
ScrFI	CCNGG	3 cut(s)	50, 273, 419
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	108, 236
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	48, 271, 417
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	2 cut(s)	15, 63
TaqI	TCGA	4 cut(s)	87, 126, 189, 289
TasI	AATT	1 cut(s)	450
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	339, 488
Tru9I	TTAA	2 cut(s)	339, 488
TscAI	CASTG	1 cut(s)	110
TseI	GCWGC	3 cut(s)	65, 145, 311
TspDTI	ATGAA	5 cut(s)	169, 275, 311, 424, 462
TspRI	CASTG	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.