Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006151.1

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Forward (+)

82 .. 825

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006151.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgaaaaaatactcctccaaaatcttcaaaaccaagatactgggtgagccaaccgtggtgttatgtggcactgccggtcacaagtttgtggcttccaatgaagaaaagctctttgtagcatggagacctcactccatgcaaaaactcttccgctcttcttaccaaaaatctgcttccaccgtcataccaagacaaagcgaaatgcacatacttaaggcaccggggtttctgagagccgaagccctcgttggctacgtggcagcgatggattccatgattctcgaccacctgaaaacgcattgggatggcaaacaggtggttgaggctcatcgcctcactcagatactcattttgactctctcggctaagttcttcatgggactcgaagaccattgttgtattgaaaagcttgcggagttgatggacaccatgacgctggcgcttcacactattcctgtgaatattccggggactgcatttcatcaagcaatgaaagcagcgtcggctgcgagggagattattcagtcgtttgttaaggagaagaaggaagttatggcgtctaccggaaacaaaatgcatgatcttttgtcttatatgatttctacgcccaacccggttaccggaaggttcatgccggagaatgaaattgctgataaaattatggggaatgtggccgcttcgttcaactctccagctatgactactactagacccggttaccggaaggttaatgccggagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

247

Amino Acids

27.44

Weight (kDa)

9.37

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	560
AciI	CCGC	3 cut(s)	151, 413, 675
AcoI	YGGCCR	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	620, 720
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	28, 404, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	109, 409, 695
AluI	AGCT	3 cut(s)	109, 409, 695
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	3 cut(s)	260, 497, 506
AspLEI	GCGC	1 cut(s)	442
AsuC2I	CCSGG	4 cut(s)	222, 468, 614, 714
AsuHPI	GGTGA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	272, 493, 509
BccI	CCATC	3 cut(s)	259, 299, 415
BcnI	CCSGG	4 cut(s)	222, 468, 614, 714
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	4 cut(s)	261, 498, 507, 675
BlsI	GCNGC	4 cut(s)	262, 499, 508, 676
Bme1390I	CCNGG	4 cut(s)	222, 468, 614, 714
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	4 cut(s)	222, 468, 614, 714
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	675
BpuMI	CCSGG	4 cut(s)	222, 468, 614, 714
BsaAI	YACGTR	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	54, 221, 467
BsaWI	WCCGGW	3 cut(s)	563, 620, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 720
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	495
BseDI	CCNNGG	3 cut(s)	54, 221, 467
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	620, 720
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	221, 353
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	3 cut(s)	272, 493, 509
BshFI	GGCC	1 cut(s)	674
BshNI	GGYRCC	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	393, 484
BslI	CCNNNNNNNGG	2 cut(s)	620, 720
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	393, 484
BsnI	GGCC	1 cut(s)	674
Bso31I	GGTCTC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	151, 413, 675
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	2 cut(s)	222, 352
BspLI	GGNNCC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	54, 221, 467
BssMI	GATC	1 cut(s)	580
BssNI	GRCGYC	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	55, 181
Bst6I	CTCTTC	2 cut(s)	152, 160
BstACI	GRCGYC	1 cut(s)	557
BstAFI	CTTAAG	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	411, 438
BstDEI	CTNAG	3 cut(s)	230, 339, 366
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	2 cut(s)	616, 716
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 503, 506
BstPI	GGTNACC	2 cut(s)	616, 716
BstSCI	CCNGG	4 cut(s)	220, 466, 612, 712
BstV1I	GCAGC	3 cut(s)	272, 493, 509
BstV2I	GAAGAC	1 cut(s)	393
BstXI	CCANNNNNNTGG	2 cut(s)	40, 436
BsuRI	GGCC	1 cut(s)	674
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	2 cut(s)	278, 314
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	411, 438
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	3 cut(s)	442, 489, 546
CviAII	CATG	7 cut(s)	120, 136, 274, 376, 430, 578, 631
DdeI	CTNAG	3 cut(s)	230, 339, 366
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	2 cut(s)	152, 160
EarI	CTCTTC	2 cut(s)	152, 160
Eco31I	GGTCTC	1 cut(s)	118
Eco91I	GGTNACC	2 cut(s)	616, 716
EcoO65I	GGTNACC	2 cut(s)	616, 716
EcoT22I	ATGCAT	1 cut(s)	579
FaeI	CATG	7 cut(s)	123, 139, 277, 379, 433, 581, 634
FaqI	GGGAC	2 cut(s)	393, 484
FatI	CATG	7 cut(s)	119, 135, 273, 375, 429, 577, 630
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	4 cut(s)	261, 498, 507, 675
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	261, 498, 507, 675
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	261, 498, 507, 675
GsuI	CTGGAG	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	674
HgaI	GACGC	3 cut(s)	442, 489, 546
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	7 cut(s)	123, 139, 277, 379, 433, 581, 634
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	269, 277, 355, 381
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	2 cut(s)	231, 342
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	538, 618, 718
HpyCH4III	ACNGT	2 cut(s)	55, 181
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	139, 205, 476, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 503, 506
HpyF3I	CTNAG	3 cut(s)	230, 339, 366
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	7 cut(s)	123, 139, 277, 379, 433, 581, 634
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	1 cut(s)	580
LguI	GCTCTTC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	272, 493, 509
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	77, 616, 716
MalI	GATC	1 cut(s)	582
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	1 cut(s)	580
MboII	GAAGA	7 cut(s)	16, 113, 139, 147, 364, 398, 553
MluCI	AATT	2 cut(s)	645, 657
MlyI	GAGTC	2 cut(s)	349, 375
MnlI	CCTC	6 cut(s)	25, 138, 254, 316, 344, 504
Mph1103I	ATGCAT	1 cut(s)	579
MseI	TTAA	3 cut(s)	213, 534, 729
MslI	CAYNNNNRTG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	222, 468, 614, 714
MwoI	GCNNNNNNNGC	3 cut(s)	494, 503, 506
NciI	CCSGG	4 cut(s)	222, 468, 614, 714
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	7 cut(s)	123, 139, 277, 379, 433, 581, 634
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	269, 277
PkrI	GCNGC	4 cut(s)	262, 499, 508, 676
PleI	GAGTC	2 cut(s)	349, 375
PpsI	GAGTC	2 cut(s)	349, 375
Ppu21I	YACGTR	1 cut(s)	256
PspEI	GGTNACC	2 cut(s)	616, 716
PspN4I	GGNNCC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	3 cut(s)	213, 534, 729
SatI	GCNGC	4 cut(s)	261, 498, 507, 675
Sau3AI	GATC	1 cut(s)	580
SchI	GAGTC	2 cut(s)	349, 375
ScrFI	CCNGG	4 cut(s)	222, 468, 614, 714
SetI	ASST	9 cut(s)	111, 130, 258, 291, 318, 411, 629, 697, 729
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	645, 657
SsiI	CCGC	3 cut(s)	151, 413, 675
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	220, 466, 612, 712
TaaI	ACNGT	2 cut(s)	55, 181
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	282, 384
TasI	AATT	2 cut(s)	645, 657
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	2 cut(s)	269, 277
Tru1I	TTAA	3 cut(s)	213, 534, 729
Tru9I	TTAA	3 cut(s)	213, 534, 729
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	3 cut(s)	260, 497, 506
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	17, 114, 364, 470, 506, 619, 657
TspRI	CASTG	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.