Rw4G027970

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000778
Physical Location & Seq
Reverse (-)
54686855 .. 54687829
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027970.1

Sequence Viewer

Length: 975 bp
ATGCAAATGGAGATGGAGAATCTGACTCTCTTCTTTCCTGTATCTGTTCTCGTTTTCATATGTGCTCTTCTCTTTTTTGCCTTCAAGTACTCAAAATCCAATGCCAAAACCAACTTTCCTCCGGGAAGTTTTGGATGGCCAATTATTGGTGAGACGTTCTCATTCATCAATGAAACGCAGCAAAGATTTGTGGGGGACAGAATGAAAAGATACTCCCCAAAACTCTTCAAAACCAACGTCTTCGGCGAGCCAACAGTGGTGTTTTGTGGCATTCCCGGTCACAAATTTATCGCTTCCAACGAGGAAAAACTTTTTTTGGCGTGGCGTCCACACTCCATGCAGAAGCTCTTCCGCTCTTCCTATCAAAAAGCTGCTTCCCAGGCCACCATACCACGAGCCGATGCGGTCCAAATCTATCGTGCCCCAGGTTTTCTTAAACCCGAAGCTCTGGTTCGGTACATAGAAACCATGGATTCTTTGGTTCAGGAGCACTTGAAGCTTCACTGGGATGGCAAAAGCACAGTTGAGGTATACCACCTCGCTCAGCTACTTGTGATGACTCTATCTGCTCGCTTCTTCACCGGACTCGAAAACAACCAAGGCCGCACTGAAAAGTTTACCGAATTGATGAATATCATAACTGCAGGGCTGCACACTGTTCCTTTGAGCGTTCCAGGAACCACCTTCTATCGCGCAATGAAAGCTGCGGATGCTATGAGGAAGGAGGTTCTTTTGTTGATCAAGGAGAAGAAAGCAGCAATGTCTAGTGGAGTGCAAATGCACGATATCATGTCTTTCATGTTGTTTAACGCAGATCCCACCGGTCGTTTCGTACCGGAGAACGAAGTTGCTGACAAAATTATGGGTTTGATGGCCGGTGGATTCCACTCGCCTTCCATGGCTACAAGTTTTTTAATCAAGTATCTTGGAGAGAACCCTGAAATATGTGACAAAGTCCGAACAGGTAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

324

Amino Acids

36.59

Weight (kDa)

9.2

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 320 5.2e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 531
AccII CGCG 1 cut(s) 693
AciI CCGC 4 cut(s) 352, 404, 604, 707
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 2 cut(s) 137, 873
AcsI RAATTY 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 3 cut(s) 89, 458, 834
AfiI CCNNNNNNNGG 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 821
AgsI TTSAA 3 cut(s) 85, 229, 496
AjnI CCWGG 3 cut(s) 378, 424, 673
AluBI AGCT 6 cut(s) 346, 371, 446, 499, 547, 704
AluI AGCT 6 cut(s) 346, 371, 446, 499, 547, 704
Alw21I GWGCWC 2 cut(s) 67, 492
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 809
AoxI GGCC 4 cut(s) 137, 381, 601, 873
ApeKI GCWGC 5 cut(s) 178, 371, 649, 704, 755
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsiGI ACCGGT 1 cut(s) 821
Asp700I GAANNNNTTC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 2 cut(s) 123, 276
AsuHPI GGTGA 2 cut(s) 161, 571
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 139
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 67, 492
BbvI GCAGC 5 cut(s) 190, 358, 636, 691, 767
BccI CCATC 4 cut(s) 7, 129, 503, 865
BciT130I CCWGG 3 cut(s) 380, 426, 675
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 2 cut(s) 123, 276
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 1 cut(s) 642
BisI GCNGC 6 cut(s) 179, 372, 604, 650, 705, 756
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 6 cut(s) 180, 373, 605, 651, 706, 757
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 5 cut(s) 123, 276, 380, 426, 675
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 5 cut(s) 123, 276, 380, 426, 675
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 391, 700
BmuI ACTGGG 1 cut(s) 514
BpiI GAAGAC 1 cut(s) 232
BplI GAGNNNNNCTC 2 cut(s) 143, 175
Bpu1102I GCTNAGC 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 123, 276
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 5 cut(s) 378, 424, 468, 598, 897
BsaWI WCCGGW 3 cut(s) 581, 821, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 2 cut(s) 821, 875
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 2 cut(s) 702, 765
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 3 cut(s) 380, 426, 675
BseDI CCNNGG 5 cut(s) 378, 424, 468, 598, 897
BseGI GGATG 3 cut(s) 140, 514, 715
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 2 cut(s) 702, 765
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 5 cut(s) 190, 358, 636, 691, 767
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 693
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 4 cut(s) 139, 383, 603, 875
BshTI ACCGGT 1 cut(s) 821
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 2 cut(s) 67, 492
BsiSI CCGG 6 cut(s) 122, 276, 582, 822, 836, 876
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 4 cut(s) 139, 383, 603, 875
Bsp1286I GDGCHC 3 cut(s) 67, 424, 492
Bsp143I GATC 2 cut(s) 738, 814
Bsp1720I GCTNAGC 1 cut(s) 543
Bsp19I CCATGG 2 cut(s) 468, 897
BspACI CCGC 4 cut(s) 352, 404, 604, 707
BspANI GGCC 4 cut(s) 139, 383, 603, 875
BspCNI CTCAG 1 cut(s) 556
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 1 cut(s) 646
BspPI GGATC 1 cut(s) 809
BspQI GCTCTTC 3 cut(s) 72, 353, 361
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 2 cut(s) 702, 765
BsrFI RCCGGY 2 cut(s) 821, 875
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 2 cut(s) 821, 875
BssECI CCNNGG 5 cut(s) 378, 424, 468, 598, 897
BssMI GATC 2 cut(s) 738, 814
BssNAI GTATAC 1 cut(s) 532
BssNI GRCGYC 1 cut(s) 325
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 3 cut(s) 468, 598, 897
Bst1107I GTATAC 1 cut(s) 532
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 380, 426, 675
Bst4CI ACNGT 3 cut(s) 256, 523, 658
Bst6I CTCTTC 5 cut(s) 35, 72, 230, 353, 361
BstACI GRCGYC 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 248, 571
BstDEI CTNAG 1 cut(s) 543
BstDSI CCRYGG 2 cut(s) 468, 897
BstF5I GGATG 3 cut(s) 140, 514, 715
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 2 cut(s) 741, 817
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 738, 814
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 4 cut(s) 380, 496, 701, 710
BstNI CCWGG 3 cut(s) 380, 426, 675
BstSCI CCNGG 5 cut(s) 121, 274, 378, 424, 673
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 5 cut(s) 190, 358, 636, 691, 767
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 532
BsuRI GGCC 4 cut(s) 139, 383, 603, 875
BtgI CCRYGG 2 cut(s) 468, 897
BtsCI GGATG 3 cut(s) 140, 514, 715
BtsIMutI CAGTG 4 cut(s) 261, 502, 606, 654
Cac8I GCNNGC 2 cut(s) 248, 571
CfoI GCGC 1 cut(s) 695
Cfr10I RCCGGY 2 cut(s) 821, 875
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 88, 457, 833
CspAI ACCGGT 1 cut(s) 821
CviAII CATG 5 cut(s) 337, 469, 790, 799, 898
CviQI GTAC 3 cut(s) 88, 457, 833
DdeI CTNAG 1 cut(s) 543
DpnI GATC 2 cut(s) 740, 816
DpnII GATC 2 cut(s) 738, 814
EaeI YGGCCR 2 cut(s) 137, 873
Eam1104I CTCTTC 5 cut(s) 35, 72, 230, 353, 361
EarI CTCTTC 5 cut(s) 35, 72, 230, 353, 361
Eco130I CCWWGG 3 cut(s) 468, 598, 897
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 1 cut(s) 406
EcoRII CCWGG 3 cut(s) 378, 424, 673
EcoRV GATATC 1 cut(s) 787
EcoT14I CCWWGG 3 cut(s) 468, 598, 897
ErhI CCWWGG 3 cut(s) 468, 598, 897
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 5 cut(s) 340, 472, 793, 802, 901
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 336, 468, 789, 798, 897
FauNDI CATATG 1 cut(s) 59
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 6 cut(s) 179, 372, 604, 650, 705, 756
FokI GGATG 3 cut(s) 147, 521, 722
Fsp4HI GCNGC 6 cut(s) 179, 372, 604, 650, 705, 756
FspBI CTAG 1 cut(s) 765
GlaI GCGC 1 cut(s) 694
GluI GCNGC 6 cut(s) 179, 372, 604, 650, 705, 756
HaeIII GGCC 4 cut(s) 139, 383, 603, 875
HapII CCGG 6 cut(s) 122, 276, 582, 822, 836, 876
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 695
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 5 cut(s) 340, 472, 793, 802, 901
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 6 cut(s) 19, 25, 473, 559, 585, 882
HpaII CCGG 6 cut(s) 122, 276, 582, 822, 836, 876
HphI GGTGA 2 cut(s) 161, 571
Hpy166II GTNNAC 3 cut(s) 329, 532, 618
Hpy188I TCNGA 2 cut(s) 24, 959
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 3 cut(s) 329, 532, 618
HpyAV CCTTC 4 cut(s) 91, 694, 715, 903
HpyCH4III ACNGT 3 cut(s) 256, 523, 658
HpyCH4IV ACGT 2 cut(s) 155, 237
HpyCH4V TGCA 6 cut(s) 4, 340, 644, 652, 775, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 496, 701, 710
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 2 cut(s) 155, 237
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 5 cut(s) 340, 472, 793, 802, 901
HspAI GCGC 1 cut(s) 693
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 2 cut(s) 738, 814
LguI GCTCTTC 3 cut(s) 72, 353, 361
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 5 cut(s) 190, 358, 636, 691, 767
LweI GCATC 2 cut(s) 391, 700
MaeI CTAG 1 cut(s) 765
MaeII ACGT 2 cut(s) 155, 237
MaeIII GTNAC 3 cut(s) 278, 947, 965
MalI GATC 2 cut(s) 740, 816
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 738, 814
MboII GAAGA 8 cut(s) 22, 59, 217, 232, 340, 348, 568, 760
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 3 cut(s) 67, 424, 492
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 4 cut(s) 141, 284, 623, 858
MluNI TGGCCA 1 cut(s) 139
MlyI GAGTC 3 cut(s) 19, 553, 579
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 6 cut(s) 129, 295, 520, 548, 711, 718
Mox20I TGGCCA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 139
MseI TTAA 4 cut(s) 435, 807, 914, 973
MslI CAYNNNNRTG 1 cut(s) 507
Msp20I TGGCCA 1 cut(s) 139
MspI CCGG 6 cut(s) 122, 276, 582, 822, 836, 876
MspR9I CCNGG 5 cut(s) 123, 276, 380, 426, 675
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 3 cut(s) 380, 426, 675
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 4 cut(s) 380, 496, 701, 710
NciI CCSGG 2 cut(s) 123, 276
NcoI CCATGG 2 cut(s) 468, 897
NdeI CATATG 1 cut(s) 59
NdeII GATC 2 cut(s) 738, 814
NlaIII CATG 5 cut(s) 340, 472, 793, 802, 901
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 278, 947
PciSI GCTCTTC 3 cut(s) 72, 353, 361
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 297
PctI GAATGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 19, 473, 882
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 1 cut(s) 146
PfoI TCCNGGA 2 cut(s) 121, 673
PinAI ACCGGT 1 cut(s) 821
PkrI GCNGC 6 cut(s) 180, 373, 605, 651, 706, 757
PleI GAGTC 3 cut(s) 19, 553, 579
PpsI GAGTC 3 cut(s) 19, 553, 579
Psp6I CCWGG 3 cut(s) 378, 424, 673
PspGI CCWGG 3 cut(s) 378, 424, 673
PspN4I GGNNCC 1 cut(s) 679
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 1 cut(s) 814
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 3 cut(s) 89, 458, 834
RsaNI GTAC 3 cut(s) 88, 457, 833
RseI CAYNNNNRTG 1 cut(s) 507
SapI GCTCTTC 3 cut(s) 72, 353, 361
SaqAI TTAA 4 cut(s) 435, 807, 914, 973
SatI GCNGC 6 cut(s) 179, 372, 604, 650, 705, 756
Sau3AI GATC 2 cut(s) 738, 814
Sau96I GGNCC 1 cut(s) 406
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 3 cut(s) 19, 553, 579
ScrFI CCNGG 5 cut(s) 123, 276, 380, 426, 675
SduI GDGCHC 3 cut(s) 67, 424, 492
SfaNI GCATC 2 cut(s) 391, 700
SfcI CTRYAG 1 cut(s) 642
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 4 cut(s) 141, 284, 623, 858
SsiI CCGC 4 cut(s) 352, 404, 604, 707
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 5 cut(s) 121, 274, 378, 424, 673
StyI CCWWGG 3 cut(s) 468, 598, 897
TaaI ACNGT 3 cut(s) 256, 523, 658
TaiI ACGT 2 cut(s) 158, 240
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 141, 284, 623, 858
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 3 cut(s) 19, 473, 882
Tru1I TTAA 4 cut(s) 435, 807, 914, 973
Tru9I TTAA 4 cut(s) 435, 807, 914, 973
TscAI CASTG 4 cut(s) 261, 509, 613, 661
TseFI GTSAC 2 cut(s) 278, 947
TseI GCWGC 5 cut(s) 178, 371, 649, 704, 755
Tsp45I GTSAC 2 cut(s) 278, 947
TspDTI ATGAA 7 cut(s) 46, 154, 186, 218, 644, 713, 787
TspRI CASTG 4 cut(s) 261, 509, 613, 661
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 1 cut(s) 765
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.