Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Reverse (-)

57083034 .. 57083645

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCCAAGACAAATGGAAAAGCACGTTTCTCATGCACCGGGGTTTTTGCGAGCCGAAGCCCTGGTAGTCGAGGCTTATCGCCTCACGCAGCTACTCGTTTTGACTCTCTCGGCCAAGTTCTTCATGGGACTCAAAGACAGTTGTCGTATTGATGAGCTTGTGGAGTTGATGGACACCATGAGTCTGGCGCTTCACACTATTCCTGTGAATATTCCGGGGACTGTATTTCATCGAACAATGAAAGCAGCGCCGGCTGCGAGGGAGATTATTCAGTCGTTTGCTAAGGAGAAGAAAGAAGTTATGGCGTCTACCGGAAACAAAATGCATGATCTTTTGTCTTATATGATTGCTATGCCAGACCCAACCGGAAGGTTCATGCCAGAGAATGAAATTGCTGATAAAATTATGGGGAATGTGGCCGCTTCGTTCATCTCTCCAGCTATGACTACTACTTTTATCGTGAAATTCGTGGGCGAAAGACCTGACATATATGACAAAGTCCGAATTGGTAAATCATTATTTTCTCTTCTCATATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

8.67

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	420
AcoI	YGGCCR	2 cut(s)	111, 417
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	3 cut(s)	91, 157, 440
AluI	AGCT	3 cut(s)	91, 157, 440
AoxI	GGCC	2 cut(s)	111, 417
ApeKI	GCWGC	3 cut(s)	88, 245, 254
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	190, 250
AsuC2I	CCSGG	2 cut(s)	39, 216
BbvI	GCAGC	3 cut(s)	100, 241, 257
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	39, 216
BfoI	RGCGCY	2 cut(s)	191, 251
BisI	GCNGC	4 cut(s)	89, 246, 255, 420
BlsI	GCNGC	4 cut(s)	90, 247, 256, 421
Bme1390I	CCNGG	3 cut(s)	39, 62, 216
BmrFI	CCNGG	3 cut(s)	39, 62, 216
BoxI	GACNNNNGTC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	2 cut(s)	39, 216
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	38, 60, 215
BsaWI	WCCGGW	2 cut(s)	311, 365
Bse118I	RCCGGY	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	38, 60, 215
BseXI	GCAGC	3 cut(s)	100, 241, 257
BshFI	GGCC	2 cut(s)	113, 419
BsiSI	CCGG	5 cut(s)	38, 215, 251, 312, 366
BslFI	GGGAC	2 cut(s)	141, 232
BsmFI	GGGAC	2 cut(s)	141, 232
BsnI	GGCC	2 cut(s)	113, 419
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	113, 419
BsrFI	RCCGGY	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	38, 60, 215
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	140, 223
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	51, 252
BstDEI	CTNAG	1 cut(s)	282
BstH2I	RGCGCY	2 cut(s)	191, 251
BstHHI	GCGC	2 cut(s)	190, 250
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 254
BstNI	CCWGG	1 cut(s)	62
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	37, 60, 214
BstV1I	GCAGC	3 cut(s)	100, 241, 257
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	113, 419
Cac8I	GCNNGC	2 cut(s)	51, 252
CfoI	GCGC	2 cut(s)	190, 250
Cfr10I	RCCGGY	1 cut(s)	250
CseI	GACGC	1 cut(s)	294
CviAII	CATG	5 cut(s)	32, 124, 178, 326, 376
CviJI	RGCY	9 cut(s)	53, 59, 74, 91, 113, 157, 254, 419, 440
CviKI_1	RGCY	9 cut(s)	53, 59, 74, 91, 113, 157, 254, 419, 440
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	2 cut(s)	111, 417
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	5 cut(s)	35, 127, 181, 329, 379
FaqI	GGGAC	2 cut(s)	141, 232
FatI	CATG	5 cut(s)	31, 123, 177, 325, 375
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	89, 246, 255, 420
Fsp4HI	GCNGC	4 cut(s)	89, 246, 255, 420
GlaI	GCGC	2 cut(s)	189, 249
GluI	GCNGC	4 cut(s)	89, 246, 255, 420
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	2 cut(s)	191, 251
HaeIII	GGCC	2 cut(s)	113, 419
HapII	CCGG	5 cut(s)	38, 215, 251, 312, 366
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	190, 250
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	5 cut(s)	35, 127, 181, 329, 379
Hin6I	GCGC	2 cut(s)	188, 248
HinP1I	GCGC	2 cut(s)	188, 248
HinfI	GANTC	3 cut(s)	103, 129, 181
HpaII	CCGG	5 cut(s)	38, 215, 251, 312, 366
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	503
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	2 cut(s)	140, 223
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	35, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 254
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	35, 127, 181, 329, 379
HspAI	GCGC	2 cut(s)	188, 248
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	100, 241, 257
MaeII	ACGT	1 cut(s)	24
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	112, 301, 518
MluCI	AATT	4 cut(s)	390, 402, 464, 504
MlyI	GAGTC	3 cut(s)	97, 123, 190
MnlI	CCTC	3 cut(s)	64, 92, 252
Mph1103I	ATGCAT	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	250
MspI	CCGG	5 cut(s)	38, 215, 251, 312, 366
MspR9I	CCNGG	3 cut(s)	39, 62, 216
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	251, 254
NaeI	GCCGGC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	39, 216
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	5 cut(s)	35, 127, 181, 329, 379
NmeAIII	GCCGAG	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	497
PkrI	GCNGC	4 cut(s)	90, 247, 256, 421
PleI	GAGTC	3 cut(s)	97, 123, 189
PpsI	GAGTC	3 cut(s)	97, 123, 189
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PsyI	GACNNNGTC	1 cut(s)	497
SatI	GCNGC	4 cut(s)	89, 246, 255, 420
Sau3AI	GATC	1 cut(s)	328
SchI	GAGTC	3 cut(s)	97, 123, 190
ScrFI	CCNGG	3 cut(s)	39, 62, 216
SetI	ASST	6 cut(s)	27, 93, 159, 374, 442, 484
Sse9I	AATT	4 cut(s)	390, 402, 464, 504
SsiI	CCGC	1 cut(s)	420
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	3 cut(s)	37, 60, 214
TaaI	ACNGT	2 cut(s)	140, 223
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	69, 232
TasI	AATT	4 cut(s)	390, 402, 464, 504
TauI	GCSGC	1 cut(s)	422
TseI	GCWGC	3 cut(s)	88, 245, 254
TspDTI	ATGAA	6 cut(s)	112, 218, 254, 364, 402, 418
Tth111I	GACNNNGTC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.