Rh2BG346900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000778
Physical Location & Seq
Reverse (-)
46661456 .. 46665382
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG346900.1

Sequence Viewer

Length: 1176 bp
ATGGATTACAGCCTTTATATTTTCTTGTCTACACTACTTGCCATCTTCACTACTACTACTCTTACGTTCCTTTTTTCTACTTATAAGTCAAAATCCCATGAAAAATCCATTAATCTTCCCCCTGGCAGTTTTGGGTGGCCGATTATCGGCGAAACCTTTGCCTTTCTACACAATGACCATGAAAAATTTATAGGGGATAGAATGAAGAAATACTCCTCCAAAATCTTCAAAACCAAGATACTAGGTGAGCGAACAGTGGTGTTATGTGGCACTGCCGGTCACAAATTTGTGGCTTCCAACGAAGAAAAGCTCTTTGCAGCATGGAGACCTCACTCAATGCAAAAGCTCTTCCGTTCTTCATACCAAAAAGCTACTTCCATCATCATGCCAAAACAAATGGAAAAGCACGTATCTCAGGCACCGGGGTTTCTGAGAGCCGAAGCCCTTGTTGGCTATGTTGGAGCGATGGATTCCATGGTTCTCGACCACCTGAAAACGCACTGGGATGGCAAACAGGTGGTCGAGGCTCATCACCTCACGCAGCTACTCGTTTTGACTCTCTCAGCCAAGTCATTCTTGGGACTCGAAGACCATTGTCGTATTGATAAGCTTGCGAAGTTGATGGACACCATGATGCCGGCGCTTCACACTATTCCTGTGAATATTCCGGGGACTGCATTTCATCGAGCAATGAAAGCAGTGCCGGCTGCGAGGGAGATTATTCAGTCGTTTGTTAAGGAGAAGAAAGAAGTTATGGCGTCTACAGGAAACAACATGCATGATTTTTTGTCTTATATGATTGGTACGGCAGACCCGGTTACCGGAAGGTTCATGCCGGATAATGAAATTGCTGACAAAATCATGGGGATTGTGGCCGCTTCCTTCAACTCTCCAGCTATGACTACTACTTTTATCGTGAAGTTCCTGGGCGAAAGACCTGACATTTATGACAAAGTCCGAATTGAACAAATGGAGATTTTGAAGGCCAAAAAATTTGGCGAGGCACTCAATTGGGATGATCTGCAAAAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGATGAGGCTCATACCACCTCTTCAGGGAACATTTAGAGAGGCTGCAAAGGACTTCACTTACGAAGGTTATGCAATTCCTAAAGGATGGAAGGTATGTAAGGACTTGTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

391

Amino Acids

44.3

Weight (kDa)

9.17

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 385 1.4e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 2 cut(s) 29, 761
AciI CCGC 1 cut(s) 876
AcoI YGGCCR 2 cut(s) 137, 873
AcsI RAATTY 3 cut(s) 185, 284, 992
AcuI CTGAAG 1 cut(s) 1067
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 2 cut(s) 805, 1169
AfiI CCNNNNNNNGG 3 cut(s) 146, 821, 1085
AgsI TTSAA 4 cut(s) 229, 886, 965, 982
AjnI CCWGG 3 cut(s) 121, 924, 1053
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 6 cut(s) 310, 346, 371, 544, 610, 896
AluI AGCT 6 cut(s) 310, 346, 371, 544, 610, 896
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 3 cut(s) 137, 873, 984
ApeKI GCWGC 4 cut(s) 317, 541, 707, 1103
ApoI RAATTY 3 cut(s) 185, 284, 992
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 643
AsuC2I CCSGG 3 cut(s) 423, 669, 815
AsuHPI GGTGA 2 cut(s) 257, 524
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 329, 553, 694, 1090
BccI CCATC 6 cut(s) 50, 386, 460, 500, 616, 1140
BceAI ACGGC 1 cut(s) 822
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 1112, 1146
BciT130I CCWGG 3 cut(s) 123, 926, 1055
BcnI CCSGG 3 cut(s) 423, 669, 815
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 1058
BisI GCNGC 5 cut(s) 318, 542, 708, 876, 1104
BlsI GCNGC 5 cut(s) 319, 543, 709, 877, 1105
Bme1390I CCNGG 6 cut(s) 123, 423, 669, 815, 926, 1055
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 6 cut(s) 123, 423, 669, 815, 926, 1055
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 511
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 2 cut(s) 876, 1076
BpuMI CCSGG 3 cut(s) 423, 669, 815
BsaAI YACGTR 1 cut(s) 409
BsaHI GRCGYC 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 6 cut(s) 121, 422, 474, 668, 925, 1053
BsaWI WCCGGW 1 cut(s) 821
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 821, 1085
Bse118I RCCGGY 3 cut(s) 275, 637, 703
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 3 cut(s) 123, 926, 1055
BseDI CCNNGG 6 cut(s) 121, 422, 474, 668, 925, 1053
BseGI GGATG 3 cut(s) 511, 1021, 1151
BseLI CCNNNNNNNGG 3 cut(s) 146, 821, 1085
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 422, 428, 576
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 4 cut(s) 329, 553, 694, 1090
BshFI GGCC 3 cut(s) 139, 875, 986
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 8 cut(s) 276, 422, 638, 668, 704, 815, 822, 836
BslFI GGGAC 2 cut(s) 594, 685
BslI CCNNNNNNNGG 3 cut(s) 146, 821, 1085
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 594, 685
BsnI GGCC 3 cut(s) 139, 875, 986
Bso31I GGTCTC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 1167
Bsp143I GATC 1 cut(s) 1018
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 1 cut(s) 876
BspANI GGCC 3 cut(s) 139, 875, 986
BspCNI CTCAG 3 cut(s) 423, 427, 575
BspLI GGNNCC 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 3 cut(s) 275, 637, 703
BsrGI TGTACA 1 cut(s) 1167
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 3 cut(s) 275, 637, 703
BssECI CCNNGG 6 cut(s) 121, 422, 474, 668, 925, 1053
BssMI GATC 1 cut(s) 1018
BssNI GRCGYC 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 123, 926, 1055
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 353, 1086
BstACI GRCGYC 1 cut(s) 758
BstAUI TGTACA 1 cut(s) 1167
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 3 cut(s) 612, 639, 705
BstDEI CTNAG 3 cut(s) 414, 431, 562
BstDSI CCRYGG 1 cut(s) 474
BstEII GGTNACC 1 cut(s) 817
BstF5I GGATG 3 cut(s) 511, 1021, 1151
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 1 cut(s) 1021
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 1018
BstMWI GCNNNNNNNGC 3 cut(s) 695, 704, 1058
BstNI CCWGG 3 cut(s) 123, 926, 1055
BstNSI RCATGY 1 cut(s) 778
BstPAI GACNNNNGTC 1 cut(s) 594
BstPI GGTNACC 1 cut(s) 817
BstSCI CCNGG 6 cut(s) 121, 421, 667, 813, 924, 1053
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 4 cut(s) 329, 553, 694, 1090
BstV2I GAAGAC 1 cut(s) 594
BsuRI GGCC 3 cut(s) 139, 875, 986
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 2 cut(s) 479, 1076
BtsCI GGATG 3 cut(s) 511, 1021, 1151
BtsI GCAGTG 2 cut(s) 270, 705
BtsIMutI CAGTG 4 cut(s) 261, 270, 499, 705
Cac8I GCNNGC 3 cut(s) 612, 639, 705
CfoI GCGC 1 cut(s) 643
Cfr10I RCCGGY 3 cut(s) 275, 637, 703
CseI GACGC 1 cut(s) 747
Csp6I GTAC 2 cut(s) 804, 1168
CviQI GTAC 2 cut(s) 804, 1168
DdeI CTNAG 3 cut(s) 414, 431, 562
DpnI GATC 1 cut(s) 1020
DpnII GATC 1 cut(s) 1018
EaeI YGGCCR 2 cut(s) 137, 873
Eam1104I CTCTTC 2 cut(s) 353, 1086
EarI CTCTTC 2 cut(s) 353, 1086
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 1067
Eco91I GGTNACC 1 cut(s) 817
EcoO65I GGTNACC 1 cut(s) 817
EcoRII CCWGG 3 cut(s) 121, 924, 1053
EcoT14I CCWWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 474
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 594, 685
FblI GTMKAC 2 cut(s) 29, 761
Fnu4HI GCNGC 5 cut(s) 318, 542, 708, 876, 1104
FokI GGATG 3 cut(s) 518, 1028, 1158
Fsp4HI GCNGC 5 cut(s) 318, 542, 708, 876, 1104
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 642
GluI GCNGC 5 cut(s) 318, 542, 708, 876, 1104
GsuI CTGGAG 2 cut(s) 876, 1076
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 3 cut(s) 139, 875, 986
HapII CCGG 8 cut(s) 276, 422, 638, 668, 704, 815, 822, 836
HgaI GACGC 1 cut(s) 747
HhaI GCGC 1 cut(s) 643
Hin1I GRCGYC 1 cut(s) 758
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 3 cut(s) 470, 556, 582
HpaII CCGG 8 cut(s) 276, 422, 638, 668, 704, 815, 822, 836
HphI GGTGA 2 cut(s) 257, 524
Hpy166II GTNNAC 2 cut(s) 30, 762
Hpy188I TCNGA 2 cut(s) 432, 959
Hpy188III TCNNGA 2 cut(s) 482, 916
Hpy8I GTNNAC 2 cut(s) 30, 762
HpyAV CCTTC 5 cut(s) 819, 892, 976, 1118, 1144
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 3 cut(s) 65, 408, 1047
HpyCH4V TGCA 7 cut(s) 317, 340, 677, 778, 1024, 1106, 1133
HpyF10VI GCNNNNNNNGC 3 cut(s) 695, 704, 1058
HpyF3I CTNAG 3 cut(s) 414, 431, 562
HpySE526I ACGT 3 cut(s) 65, 408, 1047
Hsp92I GRCGYC 1 cut(s) 758
HspAI GCGC 1 cut(s) 641
KroI GCCGGC 2 cut(s) 637, 703
KroNI GCCGGC 2 cut(s) 639, 705
Kzo9I GATC 1 cut(s) 1018
LguI GCTCTTC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 4 cut(s) 329, 553, 694, 1090
LweI GCATC 1 cut(s) 624
MaeI CTAG 1 cut(s) 242
MaeII ACGT 3 cut(s) 65, 408, 1047
MaeIII GTNAC 2 cut(s) 278, 817
MalI GATC 1 cut(s) 1020
MboI GATC 1 cut(s) 1018
MfeI CAATTG 1 cut(s) 1009
MluCI AATT 7 cut(s) 185, 284, 846, 960, 992, 1009, 1134
MlyI GAGTC 2 cut(s) 550, 576
MmeI TCCRAC 2 cut(s) 321, 439
Mph1103I ATGCAT 1 cut(s) 780
MroNI GCCGGC 2 cut(s) 637, 703
MseI TTAA 2 cut(s) 111, 735
MslI CAYNNNNRTG 3 cut(s) 383, 504, 632
MspI CCGG 8 cut(s) 276, 422, 638, 668, 704, 815, 822, 836
MspR9I CCNGG 6 cut(s) 123, 423, 669, 815, 926, 1055
MunI CAATTG 1 cut(s) 1009
MvaI CCWGG 3 cut(s) 123, 926, 1055
MwoI GCNNNNNNNGC 3 cut(s) 695, 704, 1058
NaeI GCCGGC 2 cut(s) 639, 705
NciI CCSGG 3 cut(s) 423, 669, 815
NcoI CCATGG 1 cut(s) 474
NdeII GATC 1 cut(s) 1018
NgoMIV GCCGGC 2 cut(s) 637, 703
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 353
PdiI GCCGGC 2 cut(s) 639, 705
PfeI GAWTC 1 cut(s) 470
PflFI GACNNNGTC 1 cut(s) 953
PkrI GCNGC 5 cut(s) 319, 543, 709, 877, 1105
PleI GAGTC 2 cut(s) 550, 576
PpsI GAGTC 2 cut(s) 550, 576
Ppu21I YACGTR 1 cut(s) 409
PshAI GACNNNNGTC 1 cut(s) 594
PshBI ATTAAT 1 cut(s) 111
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 3 cut(s) 121, 924, 1053
PspEI GGTNACC 1 cut(s) 817
PspGI CCWGG 3 cut(s) 121, 924, 1053
PspN4I GGNNCC 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 2 cut(s) 805, 1169
RsaNI GTAC 2 cut(s) 804, 1168
RseI CAYNNNNRTG 3 cut(s) 383, 504, 632
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 111, 735
SatI GCNGC 5 cut(s) 318, 542, 708, 876, 1104
Sau3AI GATC 1 cut(s) 1018
SchI GAGTC 2 cut(s) 550, 576
ScrFI CCNGG 6 cut(s) 123, 423, 669, 815, 926, 1055
SfaNI GCATC 1 cut(s) 624
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 3 cut(s) 383, 504, 632
Sse9I AATT 7 cut(s) 185, 284, 846, 960, 992, 1009, 1134
SsiI CCGC 1 cut(s) 876
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 6 cut(s) 121, 421, 667, 813, 924, 1053
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 3 cut(s) 68, 411, 1050
TaqI TCGA 4 cut(s) 483, 522, 585, 685
TasI AATT 7 cut(s) 185, 284, 846, 960, 992, 1009, 1134
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 111, 735
Tru9I TTAA 2 cut(s) 111, 735
TscAI CASTG 4 cut(s) 261, 277, 506, 705
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 4 cut(s) 317, 541, 707, 1103
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 9 cut(s) 114, 195, 218, 348, 671, 707, 820, 858, 1046
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 4 cut(s) 261, 277, 506, 705
Tth111I GACNNNGTC 1 cut(s) 953
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 3 cut(s) 185, 284, 992
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 2 cut(s) 29, 761
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.