RchiOBHm_Chr4g0393771

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000778
Physical Location & Seq
Forward (+)
9324967 .. 9330203
5237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36631

Sequence Viewer

Length: 690 bp
ATGGATTCCATGGTTCTCGACCACCTGAAAACGCACTGGGATGGCATACAGGTGGTCGAGGCTTATCGCCTCACGCAGCTACTCGTTTTGACTCTCTCGGCCAAGTTCTTCATGGGACTCAAAGACAGTTGTCGTATTGATAAGCTTGTGGAGTTTATGGACACCATGATGCTGGCGCTTCACACTATTCCTGTGAATATTCCGGGGACTGCATTTCATCGAGCAATGAAAGCAGCGCCGACTGCGAGGGAGATTGTTCAGTCGTTTGTTAAGGAGAAGAAAGAAGTTATGGCATCTACCGGAAACAAAATGCATGATCTTTTGTCTTATATGATTGCTACGATAGACCCAACCGGAAGGTTCATGCTGGAGAATGAAATTGCTGATAAAATTATGGGGAATGTAGTCGCTTCGTTCAACTCTCCAGTTATAACTACTACTTTTATCGTGAAATTCCTGGGCAAAAGACCTGACATATATGACAAAGTCCAAATTGAACAACTGGAGATTTTGAAGTCCAAAAAATCTGGCGAGGCACTCAATTGGGATGATATGCAACAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGATGAGGCTCATACCACCTCTTCAGGGAACATTTAGAGAGGCTGCAACAGACTTCACTTACCAAGGTTATACTGTTAGGATTGTGTTGTTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

229

Amino Acids

26.08

Weight (kDa)

6.97

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 223 1.2e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 599
AfiI CCNNNNNNNGG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 418, 497, 514
AjnI CCWGG 2 cut(s) 456, 585
AluBI AGCT 3 cut(s) 79, 145, 687
AluI AGCT 3 cut(s) 79, 145, 687
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 76, 233, 635
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 2 cut(s) 178, 238
AsuC2I CCSGG 1 cut(s) 204
BbvI GCAGC 3 cut(s) 88, 245, 622
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 458, 587
BcnI CCSGG 1 cut(s) 204
BfoI RGCGCY 2 cut(s) 179, 239
BglI GCCNNNNNGGC 1 cut(s) 590
BisI GCNGC 3 cut(s) 77, 234, 636
BlsI GCNGC 3 cut(s) 78, 235, 637
Bme1390I CCNGG 3 cut(s) 204, 458, 587
BmrFI CCNGG 3 cut(s) 204, 458, 587
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 159, 302
BmuI ACTGGG 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 4 cut(s) 389, 408, 524, 608
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 5 cut(s) 9, 203, 457, 585, 655
BsaWI WCCGGW 2 cut(s) 299, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse1I ACTGG 3 cut(s) 41, 425, 507
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 458, 587
BseDI CCNNGG 5 cut(s) 9, 203, 457, 585, 655
BseGI GGATG 2 cut(s) 46, 553
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 3 cut(s) 41, 425, 507
BseXI GCAGC 3 cut(s) 88, 245, 622
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 3 cut(s) 203, 300, 354
BslFI GGGAC 2 cut(s) 129, 220
BslI CCNNNNNNNGG 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 129, 220
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 3 cut(s) 41, 425, 507
BssECI CCNNGG 5 cut(s) 9, 203, 457, 585, 655
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 2 cut(s) 9, 655
Bst2UI CCWGG 2 cut(s) 458, 587
Bst4CI ACNGT 2 cut(s) 128, 667
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 46, 553
BstH2I RGCGCY 2 cut(s) 179, 239
BstHHI GCGC 2 cut(s) 178, 238
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 230, 242, 590
BstNI CCWGG 2 cut(s) 458, 587
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 3 cut(s) 202, 456, 585
BstV1I GCAGC 3 cut(s) 88, 245, 622
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 2 cut(s) 46, 553
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 2 cut(s) 178, 238
CviAII CATG 5 cut(s) 10, 112, 166, 314, 364
CviJI RGCY 8 cut(s) 62, 79, 101, 145, 584, 601, 635, 687
CviKI_1 RGCY 8 cut(s) 62, 79, 101, 145, 584, 601, 635, 687
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 9, 655
Eco57I CTGAAG 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 456, 585
EcoT14I CCWWGG 2 cut(s) 9, 655
EcoT22I ATGCAT 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 9, 655
FaeI CATG 5 cut(s) 13, 115, 169, 317, 367
FaqI GGGAC 2 cut(s) 129, 220
FatI CATG 5 cut(s) 9, 111, 165, 313, 363
Fnu4HI GCNGC 3 cut(s) 77, 234, 636
FokI GGATG 2 cut(s) 53, 560
Fsp4HI GCNGC 3 cut(s) 77, 234, 636
GlaI GCGC 2 cut(s) 177, 237
GluI GCNGC 3 cut(s) 77, 234, 636
GsuI CTGGAG 4 cut(s) 389, 408, 524, 608
HaeII RGCGCY 2 cut(s) 179, 239
HaeIII GGCC 1 cut(s) 101
HapII CCGG 3 cut(s) 203, 300, 354
HhaI GCGC 2 cut(s) 178, 238
Hin1II CATG 5 cut(s) 13, 115, 169, 317, 367
Hin6I GCGC 2 cut(s) 176, 236
HinP1I GCGC 2 cut(s) 176, 236
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 5, 91, 117
HpaII CCGG 3 cut(s) 203, 300, 354
Hpy188III TCNNGA 2 cut(s) 17, 448
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 2 cut(s) 128, 667
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 4 cut(s) 212, 313, 556, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 242, 590
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 5 cut(s) 13, 115, 169, 317, 367
HspAI GCGC 2 cut(s) 176, 236
Kzo9I GATC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 88, 245, 622
LweI GCATC 2 cut(s) 159, 302
MaeII ACGT 1 cut(s) 579
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 3 cut(s) 100, 289, 605
MfeI CAATTG 1 cut(s) 541
MluCI AATT 5 cut(s) 378, 390, 452, 492, 541
MlyI GAGTC 2 cut(s) 85, 111
MnlI CCTC 8 cut(s) 52, 80, 240, 526, 583, 591, 621, 625
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 3 cut(s) 39, 50, 167
MspI CCGG 3 cut(s) 203, 300, 354
MspR9I CCNGG 3 cut(s) 204, 458, 587
MunI CAATTG 1 cut(s) 541
MvaI CCWGG 2 cut(s) 458, 587
MwoI GCNNNNNNNGC 3 cut(s) 230, 242, 590
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 316
NlaIII CATG 5 cut(s) 13, 115, 169, 317, 367
NmeAIII GCCGAG 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 315
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 485
PkrI GCNGC 3 cut(s) 78, 235, 637
PleI GAGTC 2 cut(s) 85, 111
PpsI GAGTC 2 cut(s) 85, 111
PshAI GACNNNNGTC 1 cut(s) 129
PsiI TTATAA 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 456, 585
PspGI CCWGG 2 cut(s) 456, 585
PsyI GACNNNGTC 1 cut(s) 485
RseI CAYNNNNRTG 3 cut(s) 39, 50, 167
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 77, 234, 636
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 2 cut(s) 85, 111
ScrFI CCNGG 3 cut(s) 204, 458, 587
SfaNI GCATC 2 cut(s) 159, 302
SmiMI CAYNNNNRTG 3 cut(s) 39, 50, 167
Sse9I AATT 5 cut(s) 378, 390, 452, 492, 541
SspI AATATT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 202, 456, 585
StyI CCWWGG 2 cut(s) 9, 655
TaaI ACNGT 2 cut(s) 128, 667
TaiI ACGT 1 cut(s) 582
TaqI TCGA 3 cut(s) 18, 57, 220
TasI AATT 5 cut(s) 378, 390, 452, 492, 541
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 41
TseI GCWGC 3 cut(s) 76, 233, 635
TspDTI ATGAA 6 cut(s) 100, 206, 242, 352, 390, 578
TspRI CASTG 1 cut(s) 41
Tth111I GACNNNGTC 1 cut(s) 485
XapI RAATTY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.