Rh4AG326500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000778
Physical Location & Seq
Forward (+)
63817711 .. 63818927
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG326500.1

Sequence Viewer

Length: 969 bp
ATGGAGTCCATAGTTCAGGAGCATTTGAAGGTTCACTGGGAAGGAAAAAGCACAGTTGAGATTTACAGCCTCGCTCAGCTACTTGTAACGACTCTGTCCGCTCGATTCTTCACTGGACTCCAAAACAATAACGACCGTTGTGTTAAGTTTGCCGAGTTGATTAATATCATAGCCTCAGGGCTGCATACGTTCCCAATTAATATTCCAGGAACCGAGTTTTATCGAGCGATGAAAGCAGCCGAGGCTATGAGGAAGGAGGTACTGTTGTTGATCAAGGAGAAGAAAGCGGCCGTGTCTTCCAGTGGAGCCAAAGTAACCGACATCATGTCTCATTTGCTGTTTAACCCGGATCCGACTAGACTGTTCATACCGGAGAATGAAGTTGCAGATAAGGTCATGGGTTTGATGACGGGTGGATTTCACTCCCCTTCCATGGCTACAAGTTTTCTCATCAAGTTTCTTGGTGAAAACCCTAAAGTTTGTGAGAAAGTCCGAACAGAACAATTGGAGATTGCAAGCTCAAAACAAGATGGTGAGAATCTTAATTGGGAAGATATACAGAAAATGAAATATTCTTGGGCTGTAGCACTTGAAGTGATGAGGCTGGTGCCACCTCTTCAAGGAACGTTCAGAGAAGTTGTTACCGACTTCACCTATGAAGATTACACAATTCCAAAAGGATGGAAGGGATATTGGTCCTCCAGCAGCACAAATAAAATTGCAGAGCATTTTCCAGCACCAGAAGAGTTTGATCCGAGCAGCTTTGAGAATGGAAAGGCCGCTCCAGCTTACTCCAACATCCCATTCGGAAGCGGTCTTCGAATCTGTCCAGGAAAAGAATACGCTCGACGTCAACTTATGTGTTTCCTCCATCACGTCGTTACAAGACACAAATGGGAAGTGATAAATACAAAGGCCAAAATTGCAGGCGGTTTGAATCCTGTTCCAAAAGAAGGGTTTCACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

322

Amino Acids

36.25

Weight (kDa)

7.71

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 305 2e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 607
AccBSI CCGCTC 2 cut(s) 101, 782
AciI CCGC 5 cut(s) 99, 287, 780, 813, 930
AclI AACGTT 1 cut(s) 626
AclWI GGATC 3 cut(s) 344, 357, 746
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 850
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 433, 620, 953
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 4 cut(s) 28, 593, 620, 937
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 2 cut(s) 205, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 4 cut(s) 79, 519, 762, 788
AluI AGCT 4 cut(s) 79, 519, 762, 788
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 3 cut(s) 344, 357, 746
AoxI GGCC 3 cut(s) 288, 777, 915
ApeKI GCWGC 4 cut(s) 181, 236, 705, 759
AseI ATTAAT 2 cut(s) 162, 198
Asp700I GAANNNNTTC 1 cut(s) 957
AspS9I GGNCC 1 cut(s) 696
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 3 cut(s) 476, 545, 643
AsuII TTCGAA 1 cut(s) 820
AvaII GGWCC 1 cut(s) 696
AxyI CCTNAGG 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 288, 809
BbvI GCAGC 4 cut(s) 168, 248, 717, 771
BccI CCATC 3 cut(s) 524, 675, 879
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 207, 831
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 6 cut(s) 182, 237, 288, 706, 760, 780
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 6 cut(s) 183, 238, 289, 707, 761, 781
Bme1390I CCNGG 3 cut(s) 207, 347, 831
Bme18I GGWCC 1 cut(s) 696
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 696
BmiI GGNNCC 4 cut(s) 211, 307, 351, 609
BmrFI CCNGG 3 cut(s) 207, 347, 831
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 288, 809
BpmI CTGGAG 2 cut(s) 685, 768
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 820
BpuMI CCSGG 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 850
BsaJI CCNNGG 2 cut(s) 240, 432
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 297, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 620, 953
Bse1I ACTGG 3 cut(s) 41, 118, 300
Bse21I CCTNAGG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 207, 831
BseDI CCNNGG 2 cut(s) 240, 432
BseGI GGATG 2 cut(s) 686, 798
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 433, 620, 953
BseMII CTCAG 2 cut(s) 89, 189
BseNI ACTGG 3 cut(s) 41, 118, 300
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 168, 248, 717, 771
Bsh1285I CGRYCG 2 cut(s) 136, 291
BshFI GGCC 3 cut(s) 290, 779, 917
BshNI GGYRCC 1 cut(s) 607
BsiEI CGRYCG 2 cut(s) 136, 291
BsiSI CCGG 2 cut(s) 347, 371
BslI CCNNNNNNNGG 3 cut(s) 433, 620, 953
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 3 cut(s) 290, 779, 917
Bsp119I TTCGAA 1 cut(s) 820
Bsp143I GATC 3 cut(s) 270, 349, 751
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 5 cut(s) 99, 287, 780, 813, 930
BspANI GGCC 3 cut(s) 290, 779, 917
BspCNI CTCAG 2 cut(s) 88, 188
BspLI GGNNCC 4 cut(s) 211, 307, 351, 609
BspPI GGATC 3 cut(s) 344, 357, 746
BspT104I TTCGAA 1 cut(s) 820
BspT107I GGYRCC 1 cut(s) 607
BsrBI CCGCTC 2 cut(s) 101, 782
BsrI ACTGG 3 cut(s) 41, 118, 300
BssECI CCNNGG 2 cut(s) 240, 432
BssMI GATC 3 cut(s) 270, 349, 751
BssNI GRCGYC 1 cut(s) 850
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 207, 831
Bst4CI ACNGT 4 cut(s) 55, 137, 264, 363
Bst6I CTCTTC 2 cut(s) 621, 738
BstACI GRCGYC 1 cut(s) 850
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 2 cut(s) 517, 928
BstDEI CTNAG 2 cut(s) 75, 175
BstDSI CCRYGG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 686, 798
BstKTI GATC 3 cut(s) 273, 352, 754
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 270, 349, 751
BstMCI CGRYCG 2 cut(s) 136, 291
BstMWI GCNNNNNNNGC 4 cut(s) 233, 242, 785, 923
BstNI CCWGG 2 cut(s) 207, 831
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 3 cut(s) 205, 345, 829
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 168, 248, 717, 771
BstV2I GAAGAC 2 cut(s) 288, 809
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 1 cut(s) 349
BstZI CGGCCG 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 175
BsuRI GGCC 3 cut(s) 290, 779, 917
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 686, 798
BtsIMutI CAGTG 3 cut(s) 34, 111, 307
Cac8I GCNNGC 2 cut(s) 517, 928
Cfr13I GGNCC 1 cut(s) 696
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 325, 397, 433, 964
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 75, 175
DpnI GATC 3 cut(s) 272, 351, 753
DpnII GATC 3 cut(s) 270, 349, 751
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 621, 738
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 2 cut(s) 621, 738
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 696
Eco52I CGGCCG 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 205, 829
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 328, 400, 436, 967
FatI CATG 4 cut(s) 324, 396, 432, 963
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 6 cut(s) 182, 237, 288, 706, 760, 780
FokI GGATG 2 cut(s) 693, 785
Fsp4HI GCNGC 6 cut(s) 182, 237, 288, 706, 760, 780
FspBI CTAG 1 cut(s) 357
GluI GCNGC 6 cut(s) 182, 237, 288, 706, 760, 780
GsuI CTGGAG 2 cut(s) 685, 768
HaeIII GGCC 3 cut(s) 290, 779, 917
HapII CCGG 2 cut(s) 347, 371
Hin1I GRCGYC 1 cut(s) 850
Hin1II CATG 4 cut(s) 328, 400, 436, 967
HincII GTYRAC 1 cut(s) 854
HindII GTYRAC 1 cut(s) 854
HinfI GANTC 7 cut(s) 5, 91, 105, 117, 538, 822, 937
HpaII CCGG 2 cut(s) 347, 371
HphI GGTGA 3 cut(s) 476, 545, 643
Hpy166II GTNNAC 2 cut(s) 34, 854
Hpy188I TCNGA 5 cut(s) 354, 494, 632, 756, 809
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 34, 854
Hpy99I CGWCG 2 cut(s) 852, 881
HpyAV CCTTC 6 cut(s) 22, 35, 247, 438, 679, 947
HpyCH4III ACNGT 4 cut(s) 55, 137, 264, 363
HpyCH4IV ACGT 4 cut(s) 188, 626, 850, 876
HpyCH4V TGCA 5 cut(s) 184, 386, 515, 722, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 242, 785, 923
HpyF3I CTNAG 2 cut(s) 75, 175
HpySE526I ACGT 4 cut(s) 188, 626, 850, 876
Hsp92I GRCGYC 1 cut(s) 850
Hsp92II CATG 4 cut(s) 328, 400, 436, 967
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 3 cut(s) 270, 349, 751
LmnI GCTCC 3 cut(s) 19, 305, 787
Lsp1109I GCAGC 4 cut(s) 168, 248, 717, 771
MaeI CTAG 1 cut(s) 357
MaeII ACGT 4 cut(s) 188, 626, 850, 876
MaeIII GTNAC 4 cut(s) 85, 313, 640, 880
MalI GATC 3 cut(s) 272, 351, 753
MbiI CCGCTC 2 cut(s) 101, 782
MboI GATC 3 cut(s) 270, 349, 751
MboII GAAGA 8 cut(s) 100, 288, 292, 563, 608, 671, 755, 809
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 1 cut(s) 349
MluCI AATT 6 cut(s) 195, 503, 544, 669, 717, 921
MlyI GAGTC 3 cut(s) 14, 85, 111
MmeI TCCRAC 2 cut(s) 377, 819
MnlI CCTC 9 cut(s) 80, 184, 235, 243, 250, 594, 624, 709, 878
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 5 cut(s) 144, 162, 198, 342, 543
MspI CCGG 2 cut(s) 347, 371
MspR9I CCNGG 3 cut(s) 207, 347, 831
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 2 cut(s) 207, 831
MwoI GCNNNNNNNGC 4 cut(s) 233, 242, 785, 923
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 432
NdeII GATC 3 cut(s) 270, 349, 751
NlaIII CATG 4 cut(s) 328, 400, 436, 967
NlaIV GGNNCC 4 cut(s) 211, 307, 351, 609
NmeAIII GCCGAG 2 cut(s) 178, 265
NspI RCATGY 1 cut(s) 967
NspV TTCGAA 1 cut(s) 820
PciI ACATGT 1 cut(s) 963
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 4 cut(s) 105, 538, 822, 937
PflFI GACNNNGTC 1 cut(s) 94
PfoI TCCNGGA 2 cut(s) 205, 829
PkrI GCNGC 6 cut(s) 183, 238, 289, 707, 761, 781
PleI GAGTC 3 cut(s) 13, 85, 111
PpsI GAGTC 3 cut(s) 13, 85, 111
PscI ACATGT 1 cut(s) 963
PshBI ATTAAT 2 cut(s) 162, 198
Psp1406I AACGTT 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 205, 829
PspGI CCWGG 2 cut(s) 205, 829
PspN4I GGNNCC 4 cut(s) 211, 307, 351, 609
PspPI GGNCC 1 cut(s) 696
PsuI RGATCY 1 cut(s) 349
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 5 cut(s) 144, 162, 198, 342, 543
SatI GCNGC 6 cut(s) 182, 237, 288, 706, 760, 780
Sau3AI GATC 3 cut(s) 270, 349, 751
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 3 cut(s) 14, 85, 111
ScrFI CCNGG 3 cut(s) 207, 347, 831
SfcI CTRYAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 820
SinI GGWCC 1 cut(s) 696
Sse9I AATT 6 cut(s) 195, 503, 544, 669, 717, 921
SsiI CCGC 5 cut(s) 99, 287, 780, 813, 930
SspI AATATT 2 cut(s) 202, 572
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 205, 345, 829
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 4 cut(s) 55, 137, 264, 363
TaiI ACGT 4 cut(s) 191, 629, 853, 879
TaqI TCGA 4 cut(s) 103, 223, 820, 847
TasI AATT 6 cut(s) 195, 503, 544, 669, 717, 921
TauI GCSGC 2 cut(s) 290, 782
TfiI GAWTC 4 cut(s) 105, 538, 822, 937
Tru1I TTAA 5 cut(s) 144, 162, 198, 342, 543
Tru9I TTAA 5 cut(s) 144, 162, 198, 342, 543
TscAI CASTG 3 cut(s) 41, 118, 307
TseI GCWGC 4 cut(s) 181, 236, 705, 759
TspDTI ATGAA 5 cut(s) 245, 355, 393, 581, 672
TspRI CASTG 3 cut(s) 41, 118, 307
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 696
VspI ATTAAT 2 cut(s) 162, 198
XagI CCTNNNNNAGG 1 cut(s) 618
XceI RCATGY 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 1 cut(s) 357
ZraI GACGTC 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.