RchiOBHm_Chr4g0393731

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000778
Physical Location & Seq
Forward (+)
9278263 .. 9279302
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36627

Sequence Viewer

Length: 450 bp
ATGAAAGCAGCGTTTGTTAAGGAGAAGAAAGAAGTTATGGCGTCTACCGGAAACAAAATGCATGATCTTTTGTCTTATATGATTGCTACGCCAGACCCAACCGGAAGGTTCATGCCGGAGAATGAAATTGCTAATAAAATTATGGGGAATGTGGCCGCTTCGTTCAACTCTCCAGCTATGACTACTACTTTTATCGTGAAATTCCTGGGCGAAAGACCTGACATATATGACGAAGTTCTAATTGGAGATTTTGAAGTCCAAAAAATCTGGCGATCGGCATTCAATTGGGATGATATGCAAAAAATGAAGTATTCGTGGAACGTAGCCCTGGAGGCGAAGAGGCTCATACTACCTCTTCAGGGAACATTTAGAGAGGGTGCAACAGACTTCACTTACCAAGGTTATACAATTCATAAAGGATGGAAGGTATGTAAGGACTTATACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

149

Amino Acids

17.13

Weight (kDa)

7.78

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 143 3.9e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 44
AciI CCGC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 166, 254, 283
AjnI CCWGG 2 cut(s) 204, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 200
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 206, 329
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 2 cut(s) 9, 156
BlsI GCNGC 2 cut(s) 10, 157
Bme1390I CCNGG 2 cut(s) 206, 329
BmrFI CCNGG 2 cut(s) 206, 329
BpmI CTGGAG 2 cut(s) 156, 350
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 205, 327, 397
BsaWI WCCGGW 2 cut(s) 47, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 206, 329
BseDI CCNNGG 3 cut(s) 205, 327, 397
BseGI GGATG 2 cut(s) 295, 425
BseLI CCNNNNNNNGG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 275
BsiSI CCGG 3 cut(s) 48, 102, 116
BslI CCNNNNNNNGG 1 cut(s) 359
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 64, 272
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 205, 327, 397
BssMI GATC 2 cut(s) 64, 272
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 2 cut(s) 206, 329
Bst6I CTCTTC 2 cut(s) 332, 360
BstACI GRCGYC 1 cut(s) 41
BstF5I GGATG 2 cut(s) 295, 425
BstKTI GATC 2 cut(s) 67, 275
BstMBI GATC 2 cut(s) 64, 272
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 2 cut(s) 206, 329
BstSCI CCNGG 2 cut(s) 204, 327
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 295, 425
CseI GACGC 1 cut(s) 30
CviAII CATG 2 cut(s) 62, 112
CviJI RGCY 4 cut(s) 155, 176, 326, 343
CviKI_1 RGCY 4 cut(s) 155, 176, 326, 343
DpnI GATC 2 cut(s) 66, 274
DpnII GATC 2 cut(s) 64, 272
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 332, 360
EarI CTCTTC 2 cut(s) 332, 360
Eco130I CCWWGG 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 204, 327
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 65, 115
FatI CATG 2 cut(s) 61, 111
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 9, 156
FokI GGATG 2 cut(s) 302, 432
Fsp4HI GCNGC 2 cut(s) 9, 156
GluI GCNGC 2 cut(s) 9, 156
GsuI CTGGAG 2 cut(s) 156, 350
HaeIII GGCC 1 cut(s) 155
HapII CCGG 3 cut(s) 48, 102, 116
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 65, 115
HpaII CCGG 3 cut(s) 48, 102, 116
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 99, 418
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 61, 298, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 65, 115
Kzo9I GATC 2 cut(s) 64, 272
Lsp1109I GCAGC 1 cut(s) 20
MaeII ACGT 1 cut(s) 321
MalI GATC 2 cut(s) 66, 274
MboI GATC 2 cut(s) 64, 272
MboII GAAGA 3 cut(s) 37, 347, 349
MfeI CAATTG 1 cut(s) 283
MluCI AATT 6 cut(s) 126, 138, 200, 240, 283, 408
MnlI CCTC 4 cut(s) 325, 333, 363, 367
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 1 cut(s) 18
MspI CCGG 3 cut(s) 48, 102, 116
MspR9I CCNGG 2 cut(s) 206, 329
MunI CAATTG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 2 cut(s) 206, 329
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 2 cut(s) 64, 272
NlaIII CATG 2 cut(s) 65, 115
NsiI ATGCAT 1 cut(s) 63
PctI GAATGC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 10, 157
Ple19I CGATCG 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 204, 327
PspGI CCWGG 2 cut(s) 204, 327
PvuI CGATCG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 9, 156
Sau3AI GATC 2 cut(s) 64, 272
ScrFI CCNGG 2 cut(s) 206, 329
SetI ASST 7 cut(s) 110, 178, 220, 324, 355, 403, 429
Sse9I AATT 6 cut(s) 126, 138, 200, 240, 283, 408
SsiI CCGC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 204, 327
StyI CCWWGG 1 cut(s) 397
TaiI ACGT 1 cut(s) 324
TasI AATT 6 cut(s) 126, 138, 200, 240, 283, 408
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 5 cut(s) 17, 100, 138, 320, 401
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.